Array 1 254251-255621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXU01000003.1 Escherichia coli strain HH24C NODE_3_length_341977_cov_235.762793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254251 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 254312 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 254373 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 254434 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 254495 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 254556 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 254617 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 254678 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 254739 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 254800 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 254861 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 254922 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 254983 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 255044 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 255105 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 255166 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 255227 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 255288 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 255349 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 255410 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 255471 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 255532 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 255593 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 278421-279302 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXU01000003.1 Escherichia coli strain HH24C NODE_3_length_341977_cov_235.762793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 278421 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 278482 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 278543 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 278604 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 278665 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 278726 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 278787 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 278848 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 278909 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 278970 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 279031 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 279091 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 279152 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 279213 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 279274 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //