Array 1 475220-476575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNJ010000016.1 Listeria monocytogenes strain 2014L-6166 NODE_3_length_480287_cov_47.1407_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 475220 36 100.0 30 .................................... TGCTTCTTGCTGGTCTTTGTCGAACCAATC 475286 36 100.0 30 .................................... TGGTTGACGACGGGTTGTTACAGCACTTCC 475352 36 100.0 30 .................................... TCCAAAATCTGAAAACAAAAACTACGAATT 475418 36 100.0 30 .................................... TATAGAAAGCTGTCTAGTAAATGGTAATCA 475484 36 100.0 30 .................................... AGAACGCGGAGTTGTAGTAGTAGGCATGCA 475550 36 100.0 30 .................................... ATTTGCCAATTTAACTATCGTTTCCATGTC 475616 36 100.0 30 .................................... CGTCCCATCATCACTTGCGGAAACAATATT 475682 36 100.0 30 .................................... TATCGAGGCACGTGTTATTGCGTGGCTTGC 475748 36 100.0 30 .................................... TTGCAGCTAAGAATAACAGAATGATGTTGC 475814 36 100.0 30 .................................... GACACTAAAAAAGTTAAATCCGAATTGATT 475880 36 100.0 30 .................................... TTGTTGCGCTACTAATACGCCCCTCTAAGT 475946 36 100.0 30 .................................... CCATGTCAATATGAAAGCCGTGCAAGAGGA 476012 36 100.0 30 .................................... TCAGAAATAAATATAATTTAGGTGAAGACG 476078 36 100.0 30 .................................... TTTGTCAATGTAACGCAACTTAAAATGGTA 476144 36 100.0 30 .................................... CGTAATAGTGTTCTCACCTTCTACAAGTGA 476210 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 476276 36 100.0 30 .................................... TCAAAGCGCCGATATTTTCAATCTCAATAG 476342 36 100.0 30 .................................... AAAAATTAGAACAAACACCAGAGTTTTCAC 476408 36 100.0 30 .................................... ATTTTCTCGTTCGTTACAGTGATGGGCATG 476474 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 476540 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGACAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CCTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACGGGCACTATTGAACAAGTAGAAACGGAATTTATTTTAATCAAAAATTTCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCAAACTAAACAAAAATGACAATATAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 280509-279706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNJ010000005.1 Listeria monocytogenes strain 2014L-6166 NODE_5_length_326134_cov_42.6603_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 280508 29 100.0 35 ............................. TCCGGAATCTTCTCCCCTTTTTTTAAAACAATTAA 280444 29 100.0 35 ............................. ATTACATCTGGTTCTGGAAAAGCATCCGCATTTAG 280380 29 100.0 36 ............................. TGATGAATTTGATTACAAATTCTTTGATATACCGGA 280315 29 100.0 37 ............................. GGATTATAAATGCTAAAATGGTTTGCGTGATGTGTGT 280249 29 100.0 35 ............................. TTGCTTTTATTTCTTTTTCTGTGAATCGTGTTTTA 280185 29 100.0 36 ............................. ATTATTCTTATAGCAAACGAAAAACAAGGGAATGCT 280120 29 96.6 37 ..............A.............. CGGATTTAATCCCCCCGGGTAAAAATTTTAAAACTTT 280054 29 96.6 35 ..............A.............. AATTTTTTCCGCGAAAAAGTGAAAGCAAATTTAGA 279990 29 93.1 35 ..............A...A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 279926 29 100.0 35 ............................. AACTGTGTATTGGCTTCACCAACGGCATCACCGAC 279862 29 96.6 35 ..........................G.. ATCACTCCCAGCTTATCTAGCGGATTCCCTTGTTT 279798 29 89.7 35 ......T.......A........A..... GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 279734 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 96.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGAAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGTGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCATTCAGATTTAACTCCACCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //