Array 1 227058-227697 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLI01000082.1 Escherichia coli strain SC402 NODE_1_length_292874_cov_170.056_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227058 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 227120 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 227181 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 227242 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 227303 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 227364 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 227425 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 227486 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 227547 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 227608 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 227669 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAAGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 253401-254711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLI01000082.1 Escherichia coli strain SC402 NODE_1_length_292874_cov_170.056_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 253401 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 253462 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 253523 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 253584 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 253645 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 253706 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 253767 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 253828 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 253889 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 253950 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 254011 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 254073 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 254134 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 254195 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 254256 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 254317 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 254378 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 254439 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 254500 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 254561 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 254622 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 254683 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //