Array 1 159612-161263 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTU01000024.1 Providencia sp. wls1943 341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159612 28 100.0 32 ............................ ATATAGCCAAAAAACTGGCGGGAACGGCTGAA 159672 28 100.0 32 ............................ CGGTTAGTATCGGCGAGATTGTGCAAGGGTAT 159732 28 100.0 32 ............................ TTGCTTCCGCCAACAGCATACATTTGCTTATT 159792 28 100.0 32 ............................ CTTTCGGCGCTCTAAACTTACGCATGAAATTG 159852 28 100.0 32 ............................ CAGTGAACTCAGACAGAACAACATCAGGCTTG 159912 28 100.0 32 ............................ ATGATGACTTTTACGATTTCATGATGTGTATT 159972 28 100.0 32 ............................ TGAAACCGTTACTGAACAGCCTGAAACCGTTA 160032 28 100.0 32 ............................ ACATTAATCTTCATATTCATTCACCGGGTGGT 160092 28 100.0 33 ............................ AACCAGCCATGCCAGCAATGCCGCCTGCGATTT 160153 28 100.0 32 ............................ TATCACCGATTGCACTCACTGGATTTGCATCG 160213 28 100.0 32 ............................ AGACCGTAATCCGTTAGGCGCAGAGTTAATGA 160273 28 100.0 32 ............................ CCCACAGAAAACCATCATGCACAATCTCGCAG 160333 28 100.0 32 ............................ TGACAGGTTATAGGGAACGCCTATAGGATGAT 160393 28 100.0 32 ............................ ATATCAGCCTACACCACAAGGTATGTTGTAAT 160453 28 100.0 32 ............................ GTATACCTCACGAGCCATTGACAGCCACACAA 160513 28 100.0 33 ............................ TTGGCATACCAAAGAAAATCCTGTGGTTTAATA 160574 28 100.0 33 ............................ TGTTAAAAAAATGCTCGACGGACATTCCGAGAC 160635 28 100.0 33 ............................ GATTATTAAACTCAGCTAATTCTTGAATTCTAT 160696 28 100.0 32 ............................ TTTTTCAGATTGTGGTCATTCACGATTAACGT 160756 28 100.0 32 ............................ CGATATCTGGGGCATTTCTTTGTTGTTCAATT 160816 28 100.0 32 ............................ TCCATGCTCTCTCTTTTTATAGCAGCTAAAAC 160876 28 100.0 32 ............................ CAAAGAAAAACTAAAAGAAATAGACGAAAAGT 160936 28 100.0 32 ............................ TTACGGAAGAAATTAGAGAAGCGCTATACCGC 160996 28 100.0 32 ............................ TCAACGCAGCCTCTTTTAAATCACAAGTCTTT 161056 28 100.0 32 ............................ AAACTGTTTGTAAAATTTCGTCATAGCTTCTT 161116 28 89.3 32 ..C.......G..T.............. TCCGGCAATACTGTATGATGTCTATCGCATCC 161176 28 96.4 32 ..........G................. TATGGTGAGAAAGTGCTTGCAGAGGCGACAGC 161236 28 89.3 0 ..........G.........T...A... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.1 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GATACCCGTTCTATCCAGAATGCGGCGCGTAAAAGTGAGTTGTTAGAGACGAACTGGACAGCGACCACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTGAACAGCATGTCATTATTTGGCGGCCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATCGGGTGCGGGGTTTTCTTGATTCCTTTCGTTATGATTGTTCTATTTCTTCCTTGCTATTTTTTCGCTCTGTACATTTCTGAGTACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATAGTTTATCGTGTCGATTGGATGATGTATTTGACCTTTATTTTTTGCTATTTAAAAAATCGTCTAATAAACAACAGGTTATTATACGCTCTAAAATAAAGGGTATTTTCAGTCTTTTGGCGCTAACCGCCTGTTGTGATTTATTTTATTCCTGATAATTTATA # Right flank : ATCGATAAGTCACTATTATTTTTCTTAAACTATTAATCACAAGTTTATAGGGTAGCAACTCATTAAGGTAGGTAATAGAAGGATTGCGAAGCATCTCGCAAAATGAACCTTCAATTTTTTTAAAGCTTGTATTGATATGAGAGACAGACTTAAATGAAATAAATGATTCAAAAAAATTATTATTTTAAGCAAAGGAATATTGGCATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGAGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAATACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCACTTTATATGGCGACAGAAGTCGAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 169970-171035 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTU01000024.1 Providencia sp. wls1943 341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================== ================== 169970 28 100.0 32 ............................ ACGTACTTAAAGCGAATTGTTACCCCTGAAAG 170030 28 100.0 32 ............................ ATCAGCATAAATCTTGATGGGGTCATTTCTAT 170090 28 100.0 32 ............................ ACATGAAGCCCCGCCAACCACGGGGATTTTAT 170150 28 100.0 32 ............................ ATTTTTCCGTTAATCCTGTCTATTTTTCTGTA 170210 28 100.0 32 ............................ GAACGTGTGGCCAACGAACAAGCCGAAGAGCT 170270 28 100.0 32 ............................ TTTCAATAAAAACATTATAGTCCCCTATAAGG 170330 28 100.0 32 ............................ GCTGAACGTGCAGAGCGTGAAAAGCAGGAAGC 170390 28 100.0 32 ............................ TTACTGTCGCCCTATAAACGCCAAGCTCTCTT 170450 28 100.0 32 ............................ ATCAGCTTAGTTAATTACACAGCTCATTTACG 170510 28 100.0 32 ............................ ATAATCGAAGCTACTCGTTGTTGCAGAAAAAC 170570 28 100.0 32 ............................ TAGCTTAAGTTCTTACAGTGGGCAAATTGTTA 170630 28 100.0 32 ............................ ATTGCAAAATAGAGTGATTAAATTTAACTCAA 170690 28 100.0 32 ............................ CTCTGGATTTTATCTGCATTAGCTCACGAAAA 170750 28 100.0 32 ............................ ATAGAAGCTACCACAAAAAGGAGCTTCTTTTA 170810 28 100.0 115 ............................ TTGCTGATTTTTTTTGAGGTTTGTTAGAACACTTAGATTGCTGAGATATAGCGGTCATAATCTCGGAGGTATTGAATTATTGCTTTATTTTTAATGGGTAAGCGGTTACATTCAT 170953 28 67.9 27 CAGG....T.ATC...A........... TGAATAATATTACTAATTATTAGTATT 171008 28 75.0 0 ..........ATGC......A....C.C | ========== ====== ====== ====== ============================ =================================================================================================================== ================== 17 28 96.6 37 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTAAAATCTATACAAACGGTTCCCTCGAATGCTCGACCGGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCATAAGAAAGCAGCGCTTTGGGCTAAAAAATCAGGGCGCTCATTGGAGGAATGCTTAGCAGATTTAGAAGCGTCTCGCCCAACGAAGCGCAGTTTACTGCCTTTTATTTGGGTGGAAAGCTTGCATGGTAAGAGTGAGCAAATGGGAAGTCGTCCATTTCCACTTTTTATTCAGCGCGTTGAAGCGGAACAGGTCATTGAGGGGCATTTTAATTGTTATGGACTTAGCCAAGCCGTTGAACGTAATAAAATGCCGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAAAATGTCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : CTACCTTTATGAAGGCTACTTACTTTTCATCGAGTAAGTAGCCTTTTTATTTTAATCCTGAATAATATTACTAATTAATTTTGACATGATGAGTTTGTGTGCTAGTATTTGTTCGTTACCTGCTCAAAGAGGTAAAGCATTTAGGTTAAGGGGGGGATTATAGAAAGCTAGTTTTATCTATATAGCCTGAATAATATTACTAATAAATGTAAATAATAGACCAAGGTGGGCTATGGAGGAAAGGATGTTATTAAATTTAATAAAACTTTTAGGAGGTTTAACCATGCAGTGGCAATTTGAGCTTTGCATAGGTCGGTTTAAGATACGACTATCTATAACAAATTAATAGTATGTTAAATAATAAATTTGGGTAAAGCGTAGCGTATCACCTTTTACCCTTTGCTTCACATCAAACCCACAAATTAAACATTAACGACAGCTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGAATAGAAATAATCAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //