Array 1 22897-21584 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOZ01000060.1 Verrucosispora sp. ts21 NODE_60_length_38249_cov_34.9537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 22896 37 86.5 35 ..A................GT.A.............T GCACCCAACACGGTGTGCGCATGCCTGGCCTGGCA G,A [22861,22888] 22822 37 94.6 38 .......................CA............ ACGCCGACAGGTCAGCGCGGCATCTACGCCCGCTGGCA 22747 37 100.0 38 ..................................... GGCGCGGAGGCGGGCGAGTAGCTCGGCACGGGTCTGCG 22672 37 100.0 37 ..................................... GGGGTGCGTCCGGGTTCCGCTCCCGGTGCACGGCGGT 22598 37 100.0 39 ..................................... ACCCTGCGCAGCCTTACCCAGGCCGTCCAGGTTGTCGCC 22522 37 100.0 37 ..................................... TCGTCGGTTCGATCACCGACGCGCGCACCAGGGCGGG 22448 37 100.0 38 ..................................... TGTTGGGGCGGGGGTGCCGGCGTGAGCGTCAACCTTGT 22373 37 100.0 39 ..................................... GAGCCGCGGGCAGCGTGACGCCCTGGTCGACCTGGCGGC 22297 37 100.0 39 ..................................... CTCCATTCTCACTGGCCTGTTCGTCGCTCGCCGCGTCGA 22221 37 100.0 37 ..................................... GACCAGTTCCCGCATCAGCACCTCGGGGGTGCCTGTT 22147 37 100.0 37 ..................................... GTTGGCGTCGAGGGTCAGAGACACCTCGTCGCTTCCG 22073 37 100.0 36 ..................................... GCGGAGGACCTTCTGGTTGGACTCGGGCCAGCAGAC 22000 37 100.0 40 ..................................... GCGGGGCGGGTAAGCGTGTTCCTGGGTGGGTGGCGGAAGT 21923 37 100.0 38 ..................................... ATCCTTGCGGGTGTTCCAGGTGCCATTCCGGATCTCCA 21848 37 100.0 39 ..................................... GTCCGACTTCGGCTTGGCACCCTTTCGGACACCGCGTGT 21772 37 100.0 38 ..................................... AAGGCAGCCGTGAAGGGCAACCCGCGGCTCGCTGCCGA 21697 37 100.0 40 ..................................... CCCCGCCACCCCGGCGGCGCAACCCGCCACCGCCCGGCCC 21620 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 98.9 38 GCCGCAACGGAGACCGGCCACCGTGGGCCGGTGAAGG # Left flank : GCAGCAGCCAACTACGCCACTACTGGCCCGACCATGTCACCGCACACCTGGACCGCGGCTACGACAGCAACCGCACCCGCGACCTACTCGAAGAGATCGGCTTCCACCCCGACATCGCCCGCAAAGGCATACCCGCCCCGGTCCAGATCGGCAGACGCTGGGTGGTCGAGCGGACGAACTCGTGGATGAACGGCTTCGGCAAGATCCGCCGCTGCACCGACCGCAACGCCCAAACCATCGACTTCTACCTCTACCTCGCCGCCGCGATAGTCACGATCCGTCAACTCATCCAACGCGCCCGCACCCACTACCGATGGGACACCCGACCCACCACACGCCGCCTCAAGTAACACCTACTGCCGGTCGCTCTAAGGCTGAAGCCAACTTCCTACTAGTAGTTGACCAGCGGCGTTGACGCTGTGATGAAAGCACGATTGGTCACCGACAGCCATGGCCGTGAAGGTCGACGATGATCTCGGCGGGGATCTCCACGCCGGGGC # Right flank : GGCTCGCGAGCAGGATGAATAGAGAGTTATAGGTGATAGGCGGGGTGGGCGTGTGTGCGGATTGTGCTTCCTTGTTCCTTTTGGTGGTTCGGAACCTCATGCTTGTGCTGGGTGTGCTTGCCTCGGTCTTTCATCTGGGCAGTCGTTCATAGCTGTTGGTCGATGATGTTGGTTCGGGGTTGGTCGGCCGGTTTGCTGGCATGCTGATGGCCCGACGCTGGGCCGGGTTCCTCCGTGCTGCGGGTCGAGGCGTGAGGCTTCGGGGTCAGCTGGCGGGTCGTGGTAGTGCGGCGAGTCGGCTGAATGCGCTGGTCAGGGCTTCGGTCCAGGGCCAGTCGGTGGCGATGGCGAGGCGGGTCCGGCGGGCGGTGCGGGTGATCCGGGCGGCGACGTGCAGCAGGCGGTAGCGCAGTTTCTTGGGTTCGGCGCGGGTGAGGTCGCCGTCCAGGAGCAGGGTTTGGGTCCAGGCGATCAGGTCGATGCCGGTCAGGGCCAGCTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGGCCACCGTGGGCCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.30,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 96-1466 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOZ01000059.1 Verrucosispora sp. ts21 NODE_59_length_39386_cov_35.1301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96 29 100.0 32 ............................. CGGGCAGGTGACGTCGTGACGTACCTGCTGGC 157 29 100.0 32 ............................. GTGATCCCCGGTACGCCGATCGCCTACGGGGT 218 29 100.0 32 ............................. CGTTCGGGCGGCTCGGATGAAGCCGGGAGACA 279 29 96.6 32 ............................T CAGCACCAGCGACCCGACCAGCGCCCCGCGTA 340 29 96.6 32 ............................G GACCTGTGCCGGTCGGCCGGAGTGCCGGCGGT 401 29 100.0 32 ............................. GCGGCACCGGGTTCGGTGACGGTGGCTTCGGC 462 29 100.0 32 ............................. GGAGATTTCGCGCAGAAGCCGGGCTGGGAAAA 523 29 96.6 32 ............................T CACTAAGCGCTTACCGGTCTCGATGACGTGGC 584 29 100.0 32 ............................. ATCCAGCGCGAACTGGCCGAAGAGTTGCTGGG 645 29 100.0 32 ............................. ATCACGCCGGGCTCCGCGCCGCACGGTGAGGG 706 29 100.0 32 ............................. GCCGAGACCAGTGAGAACACGGTGGAGGATCC 767 29 100.0 32 ............................. ATGAACAGGTTTCGCATTGGGGACGTTGTGAC 828 29 100.0 32 ............................. CACTTCCTAAGTGCGGCTGTTCTTTGACTTCC 889 29 100.0 32 ............................. ACCGAACCGCTCGTCGCGCTCCAGGGCGTACT 950 29 100.0 32 ............................. AAGTTTGAACCCTTTACCTTGTGGCGTGTTCT 1011 29 100.0 32 ............................. GCGTCGACCATGGCGATCTGCGCTTCGGCGGC 1072 29 100.0 32 ............................. TCGTCGAGGCGGATGGCCTTGTCGGCGGCGAT 1133 29 96.6 32 ............................G TGCCCATCCTCGCGAACGAGTCCGGGGGGTTG 1194 29 100.0 32 ............................. AGGACCGCATCCACCGCGAGCAGCGCCAGGCA 1255 29 100.0 32 ............................. GGGCCGTCCTCCAGCGGCAGATAAGCCGCCGG 1316 29 100.0 32 ............................. CGGGTGGCGGTGTCCGGCGCTGTCATGCAGGA 1377 29 96.6 32 ............................G GTGCAGCTGCACAGCTCGGTGTTGCAGGGCTT 1438 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CACCGCACCCCTGAAAACCAGCTAACCAACTGTCCATCAAACCCGGGGCTTGACAGTGATCCCGTACCACCGGTGGTGCCCGATGAGCCAGCCGGC # Right flank : CAGGCCGTGGACCCAGGACCCGGCCGACTGTCGGCGCCGCGTGGAACTGGCTATGGCACACATTCTGGGAGTCGCGTTCGTCGGGGTTCGGGGTGCCCGGGGTGAGGACCATCTCGGCGTTTCCGCATCTGATCGGCCTGCGGCTGGAAGCGGTGGTGGTCCGGGCGGCGGCGTCGCGGACAGCGCGGGCCTCGTGCGTGGCCTGTGGGACCTGGTCGGGCAGTGTGCATCGTCGCTATTTGCGGCGGCTGGCCGACGTCAGGTTGGGCGGCCACGAGGTGTTGCTGGCGTTGACGGTCCGCCGGTTTAACTGAGTCGATAATGGATGCCGGCGACGGACGTTCGTTGAGCAGGTACCCGGGCTCACACGTCGGTATGCCCGTCCCACGGTCCTGGCGGCCGGTGACCTGCAAGCGGTCGAGTTCATCTGGGGCTGTCTTCTTCGCCTGGTTTCGGGATCGCCACCGAGGTGTGGCCGATCTCTGGAGAACGGCGCCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17911-19468 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOZ01000059.1 Verrucosispora sp. ts21 NODE_59_length_39386_cov_35.1301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17911 29 100.0 32 ............................. GGGGGTGCCGGCGGGCCACGCGCGCGCAACGC 17972 29 100.0 33 ............................. CGCTACCCGGCCTCCGCGCGCCGCGTCGACCCC 18034 29 100.0 32 ............................. CGCAGCGCCTCAGTGAGGTATCGGGGAATGCC 18095 29 100.0 32 ............................. GCCCATCCCTCCGGGCGGACGTGCAGCACGCC 18156 29 100.0 32 ............................. TCGCGGCCGTCCGGCCGACCCGGCCGGCACCC 18217 29 100.0 32 ............................. TGGGAGCCGATTAAGGTTACCCCGACCTACCA 18278 29 100.0 32 ............................. ACTCCCCAGCACCCGAATAGCTCAAATAGGTC 18339 29 100.0 32 ............................. GCCGTCGGTACGGCACGGCAGGGGTAGGCACT 18400 29 100.0 33 ............................. CGCGAGAACGCCTACCAGCGGAAATGCACAGTC 18462 29 100.0 32 ............................. ACGCCGGCGCCGGTGGTGAGCGTCATGCGTAC 18523 29 100.0 32 ............................. AGCTCCGCAACCTGGTCGGGGGTGGCGAAGGG 18584 29 96.6 32 ...............T............. GTGTCCAGCAGCAGACCAACGGCAACACGTCC 18645 29 100.0 32 ............................. GAAATCCGCCGAGCCTACGGAGCCCTCCGCTG 18706 29 100.0 32 ............................. GAGTTGCGGGCGTCCGGTGTGCGGGTGGTGCT 18767 29 100.0 32 ............................. CACCGGTAGTCGCTGGCGCCGGGATGGGGGTG 18828 29 100.0 32 ............................. GTTGTACTCGGCGATCGCCGACGCCAGCTCTT G [18850] 18890 29 100.0 32 ............................. CCGCCTCCGAGTGCACGTACCGGCTCACGTCC 18951 29 96.6 32 ............................T CGGTCAGACGGACTGGTTGTAGAGGACGGCCG 19012 29 96.6 32 ............................G AGACCGAGGACACCACCGTTTGGGAGGACTCC 19073 29 100.0 32 ............................. GTCTTCCTGGCCGTGCTCATGGTCGGGACGCT 19134 29 100.0 32 ............................. GGGAGCACCCGTCCGACCGGCGTCTACGTGTG 19195 29 96.6 32 .........A................... GCCTGTGACACCCGGCCGAGCCAGGCCACCTC 19256 29 93.1 32 ...T........................T CTGTGAGGGACGTTCGGGGGGAAGGGTGGCCA 19317 29 96.6 32 ............A................ CACACCGAGAGGAGCACCCGATGCGCGAGTTC G [19334] 19379 29 100.0 32 ............................. CAGCGGACGAGTCTCATGGGGTACGCCTCCCC 19440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : ATCGCCGGCGTCATCTCCCGCAGCGACAACCGGCGAATCGCCGGACGCGCCTCCAGCACCGGCAACGGGGCTATACGCATCGACGTCCGGCGGCTGTCCATTCCGGTCGTGGCGCTCGAACAGCAGCACGCGTACGGACACGCCTTCCGCCAACTCATCGAATTCCGCACCACCCTGGAACGAGCATCAGCGACCGGAGTCACACTCGCCCACGAGATCAGCGACGCGCTGACATCAGGCACCCTTGGCCTCACATCCTGATCGACCCCCGATGAAGCTGGGCAGTTCGGCAGCCAGGAGCGACGACCAAACTGGTCGTCCAGAATCGAGTCGCCCGAATCTGCGGCCCTACCACCCGCGATTCGCCCGGTACGCTGCTCCCAGCCGCACATCAACAGGCACGCGCCGCCCTCGCAACACGAGTGTCGAAAGGGCCGATCTTGCGAACCAAAGTGAATGAAATCGGAGTGGTTGATCTATAGCGCCGCAGGTCAAGAAGC # Right flank : CACGATCAGCCCCAGCAGGGTGCCCAGAGTGGCCTGCTCCGGCCTCGGGCCAACCCGCCGTTCGCCCGAATGAGGCGTCAGCTTGTACGGGGCAAGTTCGTTGCCCAGCTCGTCCCCGCGGTAGGTGCAACCGATCCCGATTCCATCCAGGTGGTCAAGGATTCCAGTACGTCGTGAACGTCGCCGATGCCCATCTTGTATTGCACCGCCTTGCCGCCCTGCTCGGTGAATGCAGCGCAGTTGTCAGCACGGTCGTCGATCAGTGCAGCGTCCGCGAAGGTAAGGCCGTGTTCCGCAAGCCAGGGCCCGAAGAAGCGTTGAGGGTCTTCGGCCTTTAATGCTGCGACTTCGCTGGAACAGATGATGTCGTCGAGAATGACCGCCCAGTCCGCCAGTGTCTCGGACTGGGGGGTAGGGCGACGCCTCTTGGCCCGCGCTCGGTCGAACGTCCGCAGAAAGCAGTCCATATTGTCAGTCGCCAAGACAACCAGGACATGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75-1202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNOZ01000167.1 Verrucosispora sp. ts21 NODE_167_length_1252_cov_36.2757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 75 28 100.0 33 ............................ CACGCGGCTGCAACTCGTGCTCGGTGGCACCAC 136 28 100.0 33 ............................ GGTCGACAAGGGCGTTCTGTTGCCGCTGGCGGA 197 28 100.0 33 ............................ CCCTCAACCGTTGTGATGTCAGGTGGGGCGGTC 258 28 100.0 33 ............................ GGACCACGGCGTACGCGCCGAACGCGGCAGCAA 319 28 100.0 33 ............................ CATGCCGTGGGTGATCGAGAACGTGATGGAGGC 380 28 100.0 33 ............................ CGCGACGGCGGGGTCCGTTGCGGCGAGCACCAG 441 28 100.0 33 ............................ CTCGCGCGAGGCGTGGGTGCTGCGAACGGACAT 502 28 100.0 33 ............................ CGAGATCGGCGAGGTCATGGAGTACGCCGAACT 563 28 100.0 33 ............................ CACCAATCTGGTGGCGCAGATGACCCCGTCGGC 624 28 100.0 33 ............................ TGTGGCTGTGCGGACACTGCTACGAGCAGAACG 685 28 100.0 33 ............................ CGTGCGGCTCAGGGAGCGCTAGCGGGAGAAATC 746 28 100.0 34 ............................ CAGAAATCACGAACCTTGAAAGGCGCGATTTTCT 808 28 100.0 33 ............................ TGCGTCCAAGGTCGGCGTGTTGGTGACGGACGT 869 28 100.0 33 ............................ GTCGCATCCGGCCGGGTCGCGGCTGGCGCTGGC 930 28 100.0 33 ............................ GGTGAAGGCGGCGAGCATCGCCACGTACCTCGG 991 28 100.0 33 ............................ CGCCACATCACCCGGCCGGCAACCGTCCCGCAT 1052 28 100.0 33 ............................ CCTCAACGTCGTCGGTGACCCGCTCGTCACCTA 1113 28 100.0 33 ............................ CGACCGCCTGCGGGCCGAACTGGCCGCGCAGAA 1174 28 96.4 0 ........................G... | T [1198] ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ATCTACACGCCGACGAACAGCGCATCTCGGCGATCACCGTGAATCACCCAGGCTAGAGCCACAGGTCAGGAAGTC # Right flank : CGCACCGGGTTTGATGGAGACATCGAAATCTGGGAGGAACATCAGCGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //