Array 1 32-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJU01000251.1 Serratia marcescens strain CRE78 NODE_251_length_272_cov_0.714286, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 32 29 100.0 36 ............................. GAATTGTTCAGTAAGTTATTCTCCTAACCAATCTTT 97 29 100.0 35 ............................. TGGTAGCGGAAATGTCCATTTAAAAGACGAAATCA 161 29 100.0 36 ............................. GTAATAGTTCTAGTTTTGATATGCCCGGTGGTACAG 226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 100.0 36 CTTTAAATCCCACTACGTTCAGATAAAAC # Left flank : GAATGATCCGATTGTTTTACCGGCCATCCCAC # Right flank : TTTGGAACAATGTCATAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCACTACGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 13-170 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJU01000467.1 Serratia marcescens strain CRE78 NODE_468_length_226_cov_0.877193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 13 30 100.0 34 .............................. CGATATAATCGTCCCATTCACCATGCTGAATATA 77 30 100.0 34 .............................. ATTATCCTGAAGTTGTAACAATGGACTTCTTAAT 141 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================== ================== 3 30 98.9 34 GTTTTATCTGAACGTAGTGGGATTTAAAGA # Left flank : CTATCACGTTGAG # Right flank : TTTGAGATAAAGGAATTCTCCAACTACCATATCGATGTTTTATCTGAACGTAGTGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATTTAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 151062-148636 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJU01000009.1 Serratia marcescens strain CRE78 NODE_9_length_246538_cov_62.2264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151061 28 100.0 32 ............................ AGAAGGTGACGCTGGTTCTGGCGTAATCCCCA 151001 28 100.0 32 ............................ GCCATCGCTCATTGACTCACCCGTTGCGCGGA 150941 28 100.0 32 ............................ AAAACGCCTCGGCGTGGCCAGTGTCTTGGCTA 150881 28 100.0 32 ............................ TGTCTGCCTGCAGCACGCGATCGCGATGGGCA 150821 28 100.0 32 ............................ AACTCGCCCAGGTATGTCGCAAGTCATGAAAA 150761 28 100.0 32 ............................ TATGCGTAGAACTCCAGTTCCACCACTTGAGT 150701 28 100.0 32 ............................ GGATGACTCCCGACGGTGCGGTAATGCCCTGC 150641 28 100.0 32 ............................ CTATGGTGATGGCCGTCGCTGGCGACGGCTCA 150581 28 100.0 32 ............................ CGAAGGTTGCCGAGCAGCTGGCCAGCATTGCG 150521 28 100.0 32 ............................ TGGAAAACATTGATGACATTCTGGGTACGGTT 150461 28 100.0 32 ............................ GCAATTGGTAATGGTTATCTTGAAGTATCAAT 150401 28 100.0 32 ............................ ATCACCGCCCAGCTGGCCGCAGAGACAGCGAA 150341 28 100.0 32 ............................ TCGCTGCAAGAACGTGGCGCGCGAGGCACGGC 150281 28 100.0 32 ............................ GAATGGCTGGCGTGTAACGGTGAACAGAACCG 150221 28 100.0 32 ............................ AGCAGTAGCACCCACCGTGGCACCTATAACTC 150161 28 100.0 32 ............................ TTGCGCCCACGTTTAACAACCGGCTTGATGTC 150101 28 100.0 32 ............................ TGCAAGCCGCCCAGCCGCTTCTGGCTGATGAT 150041 28 100.0 32 ............................ TTGGTGGAGGTGCGCCAGGTAATTTGCACATC 149981 28 100.0 32 ............................ AATGCGAGAGGCGGTAAACGTCGTTAAGATGC 149921 28 100.0 32 ............................ ACTGGCAATAAGTCGGCCTTTCACGTCGATTT 149861 28 100.0 32 ............................ TTTACCACCGCGGGATCGATCCTGGCAAAAGG 149801 28 100.0 32 ............................ GGCACGCTGGAAGTGCAAAAAGGCGGGGAGAT 149741 28 89.3 32 ..G.........AC.............. GTGGGTTGGCTCCGGCCAGACGATCGGCTTAC 149681 28 85.7 32 ..GA........AC.............. TGCAAGGTTTTGCAGCCGTGGGCGCTGATATA 149621 28 89.3 32 ..G........CA............... ATTCCCGCTTTGCTGGCGCGCCGGTCGATAGC 149561 28 92.9 32 ............AC.............. ATGCGGCGCTGGTCAAAGTCGTTAATGTCGTC 149501 28 89.3 32 ..G.........AC.............. CTGCGCACATTCAGCGAAATGTATCTGTCGTT 149441 28 96.4 32 ............A............... CAACCCCCCGGGCGCCATCATCCGCGCTGTGA 149381 28 96.4 32 ............A............... GGCACCTACATCATGGGCTACTTCAACACCAC 149321 28 96.4 32 ............A............... ACTACAGCACGATGACGCTGCAGGACTTGAAA 149261 28 92.9 32 ...........CA............... AAGGGGTAATCCATTAACCAACAACTGAACAT 149201 28 92.9 32 ...........CA............... ACGGATAGAAGTGGAAGCGGAACTCTTTGTTC 149141 28 92.9 32 ...........CA............... ACCTCGATTGATGCGCGCCTGGTGCAACTGAC 149081 28 92.9 31 ...........CA............... TTTAAAAGGCATAAACTATACTCCCTGCATA 149022 28 96.4 32 ............A............... AAGGGCTTCGAATTCTCGCCAAACTCCGTGAC 148962 28 92.9 32 ............A.......T....... AGTCGATGCACTCGGCGGCGGTGCGGTATGGC 148902 28 96.4 32 ............A............... TGGTAGCGATAGAGTGATTCTGTGCCGTTGCG 148842 28 96.4 32 ............A............... CGCAGCCAGGCGCCGGGCCGCCGCTGAAGTTG 148782 28 96.4 32 ............A............... GGGCTGATTATCGACGGTAATTGCTGGTACGA 148722 28 96.4 32 ............A............... TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 148662 27 78.6 0 ......C.....CC......-..C...T | ========== ====== ====== ====== ============================ ================================ ================== 41 28 96.6 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGTAGCGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCATGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCCTTTATTGCCTTGAAAAGTCTTTCCACCGGACAACATTTTCGCTTGTTCGTGAAACTGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGTTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACGCATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGAATTTTTTGTTCT # Right flank : AGAAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACAATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160109-159539 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJU01000009.1 Serratia marcescens strain CRE78 NODE_9_length_246538_cov_62.2264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160108 28 100.0 32 ............................ ATACCGTCTACGCATATGCACTTACGAAACCC 160048 28 100.0 32 ............................ GCGAGATGATTTCGTTATCGTCGGGGATCGTG 159988 28 100.0 31 ............................ CAAAAACGGGAACATTACCAAAACGGGATCG 159929 28 100.0 32 ............................ TTTACATGTTCTGCGGTAGCCGGTTGGCGTCC 159869 28 100.0 32 ............................ TCATCGGTGTCATCCAGTGCCTGGCTGATTGC 159809 28 100.0 32 ............................ TGGGTAACGATCCAATCCGGCCATTACACCGC 159749 28 100.0 32 ............................ CGTTCGAATTCTGAGCAACTGCTGCGCTACTG 159689 28 100.0 32 ............................ GAGCGCGTCACCACTTCTTCGCAGTCAGGCAC 159629 28 100.0 32 ............................ TATCATGAGCTGGCGGTGGTACGTAATTATCA 159569 28 96.4 0 ....................A....... | T,A,A [159543,159546,159548] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCTGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACTATTCAGTTCATCTGTCGTGTCTATGCGTCGCAGTGAGACGGATGGTGATACCAAACAGGAGCCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTACTCCATTCTTGGTTGCTGAACCCTTTTTTGAAGGCAATTTCTAATTGATTGATTTAAAATCGTATTTTTAAATGCTTTAAAAAAGGCTTTTTTAAAAGATATGCCGATTTTCCTCCAACAATCAGCTGATTAGCGCTAAGATTCAACG # Right flank : AAGTAATATGTATTTGGCACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGTAAAAACGTGGTAGAACGTTGGTGTTGCCTGCATTGATATGCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATAAAACAATGAAGAATGCCCTTTCCTCCTCTGAATTAAAAACGATACTGCATTCGAAGCGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //