Array 1 63463-62757 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPA01000007.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 63462 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC 63401 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 63340 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 63279 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 63218 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA 63157 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC 63096 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 63035 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 62974 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 62913 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 62852 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 62783 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72810-72232 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPA01000007.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72809 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 72748 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 72687 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 72626 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 72565 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 72504 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 72443 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 72382 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [72373] 72320 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 72259 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29265-30509 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPA01000035.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29265 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 29326 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 29387 29 93.1 32 ............TG............... TTGCGGACGTTCAGACGCTGCATGGCGTTCTC 29448 29 93.1 32 ............TG............... TTATCAATGGGGAAAAATCTTCATTTGTAACT 29509 29 100.0 32 ............................. AATCCTGGAGCTGGAAAGGGAGCTTGCCTCGC 29570 29 100.0 32 ............................. GCACCCTGGGATGCCTTTTGCACAGTGTCAGG 29631 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 29692 29 100.0 32 ............................. CAAAAATGCCAGGCACTGACTAAACCGCCGTC 29753 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 29814 29 89.7 32 A...........TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 29875 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29936 29 89.7 32 ............TGA.............. CACTACCAGATCCGAATGGACACCCGTAATGA 29997 29 96.6 32 .............C............... GAATGAGAGCAAAATAATGAAATTAACAGGAC 30058 29 93.1 32 ............TG............... CTAATGAGCGGTATATTTTTTCTAATCTGAAA 30119 29 96.6 31 .............T............... TGACTTTTAAAAAAATCAGCTGAAACAGCCG 30179 28 89.7 32 ..........-.TC............... TGCGTGCAGTAAACGAAAATACATCGGTCAAT 30239 28 89.7 32 ..........-.TG............... AATGGTGACAGGCAGTGCACCGGCCTAGAGGC 30299 28 89.7 32 ..........-.TC............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 30359 29 93.1 32 ............TG............... TAAAAGCGTTTTACATGCATTCAAAAAAGTTA 30420 29 93.1 32 ............TC............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 30481 29 75.9 0 ..........A............ACCTTC | ========== ====== ====== ====== ============================= ================================ ================== 21 29 93.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CACAAAGTCACAACAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAGGATTTGAAGGTTTCCAGCATGTCAAAATCTGCAGCGGGTACGGTAGATGAGCCGGGGCGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGCTGGCGTGGCGGGGAAGTGCTGGCAGTAAATCCGGCCTACACCAGCCTGAAATGCGCCTGCTGTGGTCATACCGCGAAGGAAAACCGTCAATCGCAGGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTACTTGCCTGCGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCACTAATAATGGGAATCCCCCTCCTGAATCTCGCAGCGTGAAGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //