Array 1 6309-5221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRR010000052.1 [Ruminococcus] lactaris strain MSK.18.64 DJNMEFPJ_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6308 32 100.0 34 ................................ ACCGATTTAGTGTATTTTAAAGCAAAAAAATAAG 6242 32 100.0 33 ................................ CAAGATTTTATTACATAAATCAAAAGAAATACG 6177 32 100.0 36 ................................ ATTGCTACTGCACCAAGAACAAGACCGAGGACAGTC 6109 32 100.0 33 ................................ TGTCCACATCCAACACACTGGATGTGTGTCAGT 6044 32 100.0 34 ................................ ACAGGAGTTGAAGAATACCGGAGCAGTCGGAGCA 5978 32 100.0 34 ................................ CATCTTGGAAATGTGGAGTGAAATAAACAGAGCA 5912 32 100.0 34 ................................ CGTAAACACCATACGCTGGATGGCTGCCTGCTTC 5846 32 100.0 34 ................................ GATTGTAAACGCTGCCTTTCCCTTCGGGCAGTTT 5780 32 100.0 34 ................................ CACGGAAGATTGCCGGAATCAACAGCAAGCAGGC 5714 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 5649 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 5582 32 100.0 34 ................................ ATATATATCATAGGAAAGGAAGGAAAAGAAATGA 5516 32 100.0 34 ................................ TTCCAACTGCTCCACGATCCGCTCCATAGGCTTG 5450 32 100.0 34 ................................ GTCAGACTCATCACTGCACCCTTTGCCCCATATA 5384 32 100.0 34 ................................ AGTTTGCATCTAGCGGAACAACTGTACCAACACC 5318 32 100.0 34 ................................ ACTTACCCGGCATCCTGTAGATAGCAGCAGCTCT 5252 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : ATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGTAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRR010000025.1 [Ruminococcus] lactaris strain MSK.18.64 DJNMEFPJ_25, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GTGGTCAAAGAAGAAGAGCAGGGACGGGTT 67 36 100.0 30 .................................... AACATCGAAATCTTGATAGAACCCATAATT 133 36 100.0 30 .................................... AGTTTTGACAGGAACAAAGAATCTCCCATC 199 36 100.0 30 .................................... CAACCGATCCATTCGCATCTGATACAAGCT 265 36 100.0 28 .................................... GACGGGAAAGCTGTGGATGCAGAGACAG 329 36 100.0 30 .................................... GTGGTCAAAGAAGAAGAGCAGGGACGGGTT 395 36 100.0 29 .................................... ACAAAATTCTCGGGAATTTTAAACCAGCG 460 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : | # Right flank : CTAAGCACAGGGAAATCATCAAAGATTCTTATACATGGAACTTCAAAAACGTGGCATATTCCGCATGATGCATGGAAAATTATAAAAGAAAATCATTACGAGTGGACAGCTCATTCCCATCCGACAATGACGAAAATAATTGCGTCACCGGAAGATCGAGAGACGTTAAAGCTATTTACCTGGCAAGAAAAAAGTATTATAATAGATTTGAAAGGTAATACAAAAGAGTTTACTGCAAGCACCCAGGATTGGATCAATGAGATATTAGGAGTGACAGGTTATGATAAGCGAGAAAAAGGCAACGAATATAGCTGGCCAAAGGCTGATTGAAAAATATGGACGTGCTTATGTTGAAAAATACAAGAACCATATTGGAATTATGTGGGAGAAAAAGTGTGGAAAATTAATAGTTGATTTTGACAAATACCATAAAGAAATAAATTCAGTGCCAGTAACTGATACAAGTGATGGGATTACGGTGAATGAAGACAATTTCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 23239-23603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRR010000040.1 [Ruminococcus] lactaris strain MSK.18.64 DJNMEFPJ_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23239 36 100.0 30 .................................... CACGCCCGATATAGGTTGCCGGGTGTACGC 23305 36 100.0 30 .................................... ACTAATGCATACTTATCGCAATCAGATATG 23371 36 100.0 29 .................................... AAAAATCACAAGAATCACTCCAAAGCGGA 23436 36 100.0 30 .................................... CGAGATTGATTCGTTCGTAATGCTCACGCC 23502 36 100.0 30 .................................... GATCTAATCTGTTTCGACCATCATTTAAGT 23568 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AACTGATCAGCAAACTTTATATGGAATTGGAAAAGCTTACTGCGGACGAACGATTCTATGTGAAAACCCAGGAAATGAAGCAATATCTGCAAGAGTATTTATTACAGCTTGAACAGGAGACAGACTATATCCTTGATCTTGCGGATGAAATAGATTTTGCCTCATTATTTAAAGCTTTTGGTATTAAATATGAGGTACTGGAAGAAAACTTCTTAGAACGTCTTGTGAGATATATGCGAATAGTGGAACGATTATTAAAGAAAAAGCTTTTTGTATTTGTTAATTTGCGAAGTTATTTATCAAATCAGCAGATTGATGAATTAATAAAAGAAGCGACGTATCAGGAAATTCAGCTTTTGTTGATTGAAACCTGTGCGAGAGATTGCATTGAGGGTGTAACAAGGTATATTATAGATAAAGATGGATGTGAAATATAACATCCTAACAGTTTGAGTACCTGTATTTTATGCGAATGATGGCATTTCATTTTTGAATTTGAG # Right flank : GTGGTCAAAGAAGAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //