Array 1 1341-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900163.1 Salinispora arenicola CNH877 F581DRAFT_scaffold00025.25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1340 28 100.0 33 ............................ CGGCATGTTGTCCGTGGTCGATGACTTCTTCGC 1279 28 100.0 33 ............................ GTCGACGGTCAGCGGCGTACGCCCGAGGTGACC 1218 28 100.0 33 ............................ GTGCTACGTCGCACGGGCGCGGCCGGCGACCAC 1157 28 100.0 34 ............................ CACCTACGCCGACGCGCTACGCGAACCCGCCCCC 1095 28 100.0 33 ............................ GTCAAGCCAAGGAGGCGCTAAGCCAACATGTAG 1034 28 100.0 33 ............................ CGGCCAGCAAGGAAACGACACGATCCTGGGCAC 973 28 100.0 33 ............................ GGCGGGATCTTCGCCACCATCGCCGGCCGCTAC 912 28 100.0 33 ............................ CGCCGCGACAACCTGACCGGTGTCCCGCCTGAG 851 28 100.0 33 ............................ CATGCATCGGGCGCTGCTCGCCGGCGCGAGTGC 790 28 100.0 33 ............................ CGCCTCAGCGAGCAGGTCGAGTGCGGCCACGAA 729 28 100.0 33 ............................ CGTGTCACCTGCTCCGTCGGCAACCGTCCCGCC 668 28 100.0 33 ............................ GCGGTCGTCCTCGTTGACCTCTGAGCAGATGAC 607 28 100.0 33 ............................ CTGCTTCTGCAAACGGTTCCGCGACGGCACCTC 546 28 100.0 34 ............................ CAAGTGGCACTCGGGTCCACCCCCCAGCCCGTTC 484 28 100.0 33 ............................ CCTGACGTGGGCGGGCGGGTTCGCCGTGCACGC 423 28 100.0 33 ............................ CTGATCAACGCCACACTCCCGCGCCTGGATGGG 362 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : TCTGGGACGAAGGCGGTCTCGAGTTGGCCGGCGGCCGGAACTACGGCGGAGACCTAGACTTCTGATGACCATTATCATCCTCACCGCGTGCCCCGAAGGACTCCGCGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTGGGACGTGTGAACAGTCGGATCCGGCACCGGCTCTGGGCGAAGGTCGTCGACATGGCCGGACCCGGCCGGGCACTGCTGGTGTATCAGCAGCCCGGCGAGCAGCGACTGTCCTTCAAGGTGCACGACCACCACTGGGAACCGGTGGACCATGACGGGATCACGTTGATGCGCCGACCGACGCAACGCACGTCGCACAACCCCGCACTGCCCGCCGGATGGAGCAAAGCATCCAAACGCCGCAGGTTCGGCCGTCGGACCCCACAAGCACCTAACGAAGTACCGACGAGCCTGAAGCAAAGTGAAGGAAAAAGCAGTAGTTGATCTTTAAAGCCCCAGCTCAAGTAGT # Right flank : CCGCGGCGAGGAGCCACACGTCGAGGCCGAGGCCCTGCTCCCTGTCAACGGCGGACTGGAACTGACCCCCTATCGACGGATTGGGATTGACCCCCTCGGGGGTCGTTTCGTTCTACTTGCCGCGGTCTTTTGCGAGGAGTTCTCGGCGGGCTTTGGTGCGGTAGGACTCGCCTGCGAGGGTGAGGACCTCGGCATGGTGCACGAGGCGGTCGATCATCGCGGCGGCGACGACTTCGTCGCCGAAGACCTCGCCCCACCGCCCGAAGGGCAGGTTCGAGGTGACGAGGATGGAACCGGTTTCGTAGCGTGATGCGACGAGTTGGAAGAAGAGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 13-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900194.1 Salinispora arenicola CNH877 F581DRAFT_scaffold00056.56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 33 ............................. GACTAGGCAGTCATCCTCGGTTGGGGTGATCTC 75 29 96.6 33 ............................G TTGTCGACCCTGACGTACGGCGAGCCCTGGTTG 137 29 100.0 32 ............................. CGGGGCAACCATGACCAGCAATAACAGCTGCC 198 29 100.0 32 ............................. GCACCCGTGACGGCATCTACACCACCCTCGGT 259 29 100.0 33 ............................. ACCCGGATCTGCACGCTGGCCTGGCCACGGCGC 321 29 100.0 32 ............................. AGCGCCGCCCCGCCCGCCGTCCTGGCCCTACG 382 29 100.0 32 ............................. GGTGAATTCCTTTAGCGCGTCGGCCGTTTTGT 443 29 100.0 32 ............................. TGTACGTCTGGCAGAACAGCGGTAGTTCGCTT 504 29 96.6 32 ............................G TGTGCGCGCCGAGGTTGGCACGTACGCGGGTC 565 29 100.0 32 ............................. TGGCCGCCGCCCTCGACGCGGCCGACCGCGAG 626 29 100.0 32 ............................. CACCACCGAGGGCGGGAACGCACACGGGCGAC 687 29 96.6 32 ............................T TTCGGCCGCCGCAGCGGCACCACGTTGTCGTC 748 29 100.0 32 ............................. AGCTCCGCGACTACAGCGTGCGCTCCAAAAGC 809 29 100.0 32 ............................. ACCGGCACGTCCCGTGCTGCCAGCTCCGCCAC 870 29 100.0 32 ............................. CTCATCACACGCGGGTATGGGCGTTCTCAGCC 931 29 93.1 32 .....T......................T CACACGGACCGACTGTTGGCGCAGGCGGCCAA 992 28 93.1 32 ............-...............G CTGAGAAACAGGAGATCCACGCCATGATCCGT 1052 28 93.1 0 .................-..........T | C [1064] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Left flank : CGCGCACCTTCGC # Right flank : TGCGGCGATCACGTCCTGGTCCTCGTCGTCGTACTGCTCCCCGCGCATGCGTGTCAACGCCGGCTGAACTTTGGCTCTGGCGCACATTTGAATGCTGTTAGTGATCTTGGTTGTCGATCGCTAAGGGACGTCTCGTATCTCGGTAGTCGCTCCATGATGGATCATGTCCTACTACAGGTGATCTCGGCAGCCAGCCAAGAGTGGATCTTTCCGTTCACCGGACTGCAGCCCGCCCAGTTCCACAGGCTGGTTCGGCTGGTCGCCGAGCGTGGCCAGGACTCAATCCCTGACGGTCGGCCGGGCCGGCAGTAGTCGCTTGACCTCACCGATCGAGTGTTGCTGGCGGCCGCGTACTGGCGGACCAACCTGACCATGCGACAGATCGACCCGCTGTTCGGGTTATCGCCTTCGGCTGCTCACCGGGCCATCGACACCCTCGCACCCCTGCTGGCCCTGGCACTGGTACGCAAACGGCCGGTCGAGCAGATCACGATCGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 126520-128511 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900148.1 Salinispora arenicola CNH877 F581DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 126520 28 100.0 34 ............................ CTGCCTCACCTACGCCCTGCAATGGCGCACAAAC 126582 28 100.0 34 ............................ CGTGATCACCTGCGGTCTGGCCGCGTGCGGAGAC 126644 28 100.0 33 ............................ CTGTTCGACTATCAGACGCTCGCCGAGCGATAC 126705 28 100.0 33 ............................ CTGTTCGACTATCAGACGCTCGCCGAGCGATAC 126766 28 100.0 34 ............................ CGCGGCGGTGATGGCGTCCAGCTCGGCCGCCGTG 126828 28 100.0 33 ............................ CCCGCCCGCGATAACGACCGCTTTGGCCATCAC 126889 28 100.0 33 ............................ CTCCCGTATGCCAGAGACGGACATGACGGTAGC 126950 28 100.0 33 ............................ GGCGTACGCCGAGGCAGTGAACAGCCGCATGCG 127011 28 100.0 33 ............................ CGCGTCGAGCAGCTACTCGCCGAGCCTGAGCCC 127072 28 100.0 34 ............................ CGTGGCCACCGTCAACGACCGGCTGTGGATGGCC 127134 28 100.0 34 ............................ CGTGGCCACCGTCAACGACCGGCTGTGGATGGCC 127196 28 100.0 34 ............................ CGTGGCCACCGTCAACGACCGGCTGTGGATGGCC 127258 28 100.0 33 ............................ CGTGGATGATCGGCCCCGGACGCCGGGCTGGTG 127319 28 100.0 33 ............................ CCGGGGAAAACGCGCCCCGGACGACCGCGTGGC 127380 28 100.0 33 ............................ CTCGGTGTTCTCGACGACATCGCGTCGTTTCTG 127441 28 100.0 33 ............................ GTCTCGTGCCGGCCGCCGCTCCATCGGCCTGCC 127502 28 100.0 34 ............................ CATGCCGCCGGTCCGGCTTGCCATCGTCCTTGAC 127564 28 100.0 33 ............................ TGGGTGTGTGGTGCGGGTTCGAGACGTGGTTCA 127625 28 100.0 34 ............................ AGCTACGACGAATTCGGCCACGCCGGCGACCTGC 127687 28 100.0 33 ............................ GTTAGATCGTGGAAAGTACGGCACCGTCAGCAA 127748 28 100.0 34 ............................ CACACCCAGGGCGCGGCTCTTGCCCGATCCGGAC 127810 28 100.0 34 ............................ CGCCGCGCGGGCGGCCCCCACGCCCTGGAAAAGC 127872 28 100.0 33 ............................ CGCTCGGGGCTGTTCTCGGGGGATGGGGCCGGC 127933 28 100.0 34 ............................ CACACCCAGGGCGCGGCTCTTGCCCGATCCGGAC 127995 28 100.0 34 ............................ CGCCGCGCGGGCGGCCCCCACGCCCTGGAAAAGC 128057 28 100.0 33 ............................ CGCCGCAACGAACTGCGGCTCGGCCACAACAGT 128118 28 100.0 33 ............................ CCCATAGCGGGTGCCGAGCGGGTCGTAGAAACG 128179 28 100.0 33 ............................ CAGCGACCGAACGTGGGCCGCGTCAAGTGGGCA 128240 28 96.4 33 ........................C... CGGGCCGGACGGCCGATACGAGCTGCACCCCCG 128301 27 96.4 33 ...-........................ CACACCGAGCCACACATCCACCCCACCACCGAC 128361 28 100.0 34 ............................ TGAGGGCACCGACATGCCGTCTCTTACCGATTCC 128423 28 100.0 33 ............................ CGGGCCCCACCGCGAGCACGACCGCCCCGGCGA 128484 28 96.4 0 ........................C... | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.7 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCGGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAAGTCGTTGAGGCCGACCCGTGGATAGCCGCTACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCTGCATGGTCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGGAAGGACGATCTTGCGGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CCGCGTCGACACCGTTCGGGATCATGGCTGGGGTTGAGGTTGAGACGGCGTGTGTAGTGGGCTCGTCGGGTTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTCGGCAGCATCCATACGGTCACCGCATCGACCGGTGTGGCGTCGACGCGTCCTGTGGGGGCGCGAGTTGGGTCTGCCGCGGTACATCCCGTCCAGACCGAGGCGGACGCGTGGTTCGCGACCAGGCCGTCGTGCGGACACACCTGGCCACCCGAGATCGAACCGAGCTGCGCCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGTCCACACGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //