Array 1 28311-35659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERPS020000001.1 Rheinheimera sp. MA13 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28311 28 100.0 32 ............................ AGCATAAAACCCCTTGTGCGTTACGCCCTCGA 28371 28 100.0 32 ............................ ACATGCAAACCTCTGTGTCGATGGCTGCAACC 28431 28 100.0 32 ............................ ATTAAGCTATTTCAGGCTCTATCTAACTATCG 28491 28 100.0 32 ............................ TGTCGGCCCAAAGCAAAAAATAAATTATCTAT 28551 28 100.0 32 ............................ AAATGGGCCAGCGCTGACGTAAACATTAATGG 28611 28 100.0 32 ............................ GGCGAGGATGTGAGAGTTATGTGGGGTTTCAG 28671 28 100.0 32 ............................ GACCTGCGTGAAGCCGCGCAGAGTATAGAATG 28731 28 100.0 33 ............................ AACGCAAGAGTTGGTTAACAAACTAACAGCAGA 28792 28 100.0 32 ............................ TAATAAAAACCTACACCAGCGAAGGTGAAACG 28852 28 100.0 32 ............................ TTGTTCTGAACCACCAAATTGATGATATAGCG 28912 28 100.0 32 ............................ TGGTTAATTAGTGAAGCCATGTAATTTTGGCG 28972 28 100.0 32 ............................ TCAGATGGTTAAGCTAGATAAGGTGCGCAAAG 29032 28 100.0 32 ............................ GAATAGTACAATCGCGCCATTAGGCTTGATAA 29092 28 100.0 32 ............................ TGCAAGCGTCTAGGTGCTGTTATCTATCTGAA 29152 28 100.0 32 ............................ AATATAAATATCCGTCTTTGCGCTCAACTGCT 29212 28 100.0 32 ............................ GGTGAAAGCGTCTGCCCGACCAACAGCGGAGT 29272 28 100.0 32 ............................ TACACCGAAAGCCATTAAGTGGTCCCCAAGTC 29332 28 100.0 32 ............................ TTGGCAGCTATCTGTCCATCAATAACCGGCAG 29392 28 100.0 32 ............................ ATCAGTAAAAACCCGCGCAGGAATGAAACTAT 29452 28 100.0 32 ............................ TGACACATTAGTTATAAATTTAGGTAAGGCTA 29512 28 100.0 32 ............................ ATGTATAACTAGGCAACTATTTTGCCTGTGCT 29572 28 100.0 32 ............................ ATTTAGCCAAGCCGAAAAACCGGCGCCGATTA 29632 28 100.0 32 ............................ GCATAGCGGTATTGTCTATATACGGTAAATAA 29692 28 100.0 32 ............................ TAGTAGAACAAGCAGTAAAAAGCCTTACAAGG 29752 28 100.0 32 ............................ AATCAGTAACTTCTGGTTTATTAACACCGCAT 29812 28 100.0 32 ............................ ATTAAGCAATTCAATGATGGGCTAGCAAAGCA 29872 28 100.0 32 ............................ CTCAACAGCTTAAGCGCTGGTTAGACGCTGGC 29932 28 100.0 32 ............................ ATCATTGCGATAACCATTAGCTTGAGCTAGCT 29992 28 100.0 32 ............................ TTACCAATCCAAGAAGCAACTAAATGGGAAAT 30052 28 100.0 32 ............................ ACGCCGTTAAGAAACTGCTAGCGCCTGGTATG 30112 28 100.0 32 ............................ CATTGTACTTCGAAGAAACCGAACGCGCCCCG 30172 28 100.0 32 ............................ CCAAACTATGCAACACTTGACGCTGATTTAAT 30232 28 100.0 32 ............................ TGACTGTTAGCGTTAAGAAAGTAATCGCGGTT 30292 28 100.0 32 ............................ GTTTGATGAACAGCCACATGCAAACCTCTGTG 30352 28 100.0 32 ............................ CTGCGGGAAAACAGCAAAACAGCAACAACACA 30412 28 100.0 32 ............................ AAAAGCGAGGAAGCCAAAGAAGCCTGGCACAA 30472 28 100.0 32 ............................ AGGTAAAATTTTGATAGCGGCGATTGCAGCAA 30532 28 100.0 32 ............................ TGGTGTGGGTGGCTGTGGCGTACCTGCGCAAG 30592 28 100.0 32 ............................ CACCCTAAATCAGCTGCACGACTTTTAAAATA 30652 28 100.0 32 ............................ AAGCGGATTCAGTTGCTGACTCTACATAGCTG 30712 28 100.0 32 ............................ TACTTGTTGCGCTCTGTGAACGGATGGTCCGC 30772 28 100.0 32 ............................ TATAAACTACTCGCAGCATGACGGGAACATCG 30832 28 100.0 32 ............................ CTGCAATAAAGGACCGTCAAAACGCCGTTCGA 30892 28 100.0 32 ............................ CTAAACTCATCAGGTAGGCGATTCTTAAGCCA 30952 28 100.0 32 ............................ TCATCCCTGTACAGCATAGCAAGGTCGCCATT 31012 28 100.0 32 ............................ GGTAAAAAGAAAAAGGTTAGTGAATAAGTGTG 31072 28 100.0 32 ............................ TGAGCGCATGAACTCTACAAGAGCTTGGATTA 31132 28 100.0 32 ............................ ATCGGAGAAGTGAAGATATGAAGCGACCAGAC 31192 28 100.0 32 ............................ AGCTGATGCTGCGCGTATGACTCTGAGCTGGC 31252 28 100.0 32 ............................ TGCCGCAATGCTGTACCAGCGTCAGCGCCCTC 31312 28 100.0 32 ............................ ATAAACTCTAAAGGGTCTCTTGTTAAAAATAG 31372 28 100.0 32 ............................ AAGCGCATCAGTGATATGATCAAGCCCTAAAG 31432 28 100.0 32 ............................ ATTATGCGCGCACCAATCCGCCACTAAACACC 31492 28 100.0 32 ............................ AAAAGCCAACTATTGAAGCGAGGTAAGAATCA 31552 28 100.0 32 ............................ ATGCCAGCTATTACCAGCGGTTTACTAGCAGC 31612 28 100.0 32 ............................ TATTGATGCGCAAGCGAAATCATACTTAATGT 31672 28 100.0 32 ............................ AAAGGAAAACAGGTCAGAGCCTAGCAGACTTT 31732 28 100.0 32 ............................ CTAAACTCATCTGGCAACCGATTCTTAAGCCA 31792 28 100.0 32 ............................ GTGAGCCGGCAGAGCGCTACAATGCGTACACC 31852 28 100.0 32 ............................ ACTACTTCACCGCAACAAACCAAACGAGGCTC 31912 28 100.0 32 ............................ AACAAACGTTGCTACACCGGCCATGTCTACAG 31972 28 100.0 32 ............................ GCTAACGGCATTACGCCGACTTTCAAAGGTAG 32032 28 100.0 32 ............................ GTTGAATCAACAACGATAAGCGCACCGGATGC 32092 28 100.0 32 ............................ GAAAGGTAGAACACCTCCAAAATCAACAACAT 32152 28 100.0 32 ............................ TCGCAATAAAGTCTTGGCACTTACTGAATATG 32212 28 100.0 32 ............................ TCTAAGCCGTCAAGCTCGATGCGTTGTAATAT 32272 28 100.0 32 ............................ TATCCAGACCCAGCGGGGCGAGCAAGAAAAAC 32332 28 100.0 32 ............................ AGCAAGGACTTGGCAAAGAGAAGGTGGCAGAA 32392 28 100.0 32 ............................ AGTTACGGTCTTTCTTCCCACGTCAGCCTAAA 32452 28 100.0 32 ............................ TGTTACAGGGTCGTATTCAATCCGCGCAATGT 32512 28 100.0 32 ............................ GTCGAGCGCGCCATCACGAAAGCCATTAACGA 32572 28 100.0 32 ............................ ATTAGCCGCTTGGCGTAGTTCTTCAGCCATAA 32632 28 100.0 32 ............................ AACACTGGTGACTATTCTGCTGCAACCAACAC 32692 28 100.0 32 ............................ ACAACGGCTATTTTTATGCACGCCGCCAAGCC 32752 28 100.0 32 ............................ TAGCCGAAGTTAAGGCGCAGGCTATTGATGGT 32812 28 100.0 32 ............................ AAGCTAAAAACCGTCGAGCTCGCCATCACGAA 32872 28 100.0 32 ............................ AATAGCAGCCGCTGCACGTACTATTGCACGGC 32932 28 100.0 32 ............................ AGATGGCGCTGACTGGCCTTTTAAAAGAAATA 32992 28 100.0 32 ............................ AATGAAATTGCCGACTTGAACACGAATGTCTT 33052 28 100.0 32 ............................ TAGCAGCCATAACCGGCGCAGCTGGCGCAGAC 33112 28 100.0 32 ............................ GAAAGAGCAGCGCAAGCAAGGATTGCAGAAAG 33172 28 100.0 32 ............................ ATCAATATAACCCATAACTTGCGCCTTAGTGG 33232 28 100.0 32 ............................ GCGACATGTCTCTTGAAATTGAAAAGTTACGT 33292 28 100.0 32 ............................ TGCTTAAGCACGAATTAAGCCTTCAGAGAGTA 33352 28 100.0 32 ............................ TGGGACGAAACGAACGGTGGCAAGTCTCCAAC 33412 28 100.0 32 ............................ ACTGTCCGAGCAGGAGCACGCGGCTTACTTGT 33472 28 100.0 32 ............................ TGACAGCAGGCATTACATTAAGCCCTGACTTT 33532 28 100.0 32 ............................ TTGGAACACCAGCACACCGGCAGCACTCACAC 33592 28 100.0 32 ............................ GCGCAGACAGGCGGGTAAGGCAGTGGCGTTTG 33652 28 100.0 32 ............................ TTACTTAAAAATACATCCAAATTTACGCGAAC 33712 28 100.0 32 ............................ TTAGAAAAAATCCAATCTACAGCCTTTTGCAC 33772 28 100.0 32 ............................ TGATTCCATTTGACCGAAACTAACGTTTAAAA 33832 28 100.0 32 ............................ ACTGGCCGATTGCCGGTTGTGGGTCGCTGGTT 33892 28 100.0 32 ............................ TGACGTTAAAAGAGAAAATGGGGGAGCTTGAT 33952 28 100.0 32 ............................ CAAAAAACAAGGAAGTAGCAGAGTTCAAAGGC 34012 28 100.0 32 ............................ TCGCTGGATTGGCTAGCGGCGTTATATCAAGC 34072 28 100.0 32 ............................ TGACGCGTACTCATAACCCACGACATGCAGCT 34132 28 100.0 32 ............................ GTGACGATAACGAAGAAAGCGACGTACCGAAC 34192 28 100.0 32 ............................ TTGCAGGAACTTAGTAGGGTTGCCGGATATAT 34252 28 100.0 32 ............................ TCAACCCAATCGTTTTCTAGTCTGCGCAATAG 34312 28 100.0 32 ............................ GTCGAGCTTGATACCCTTTACAGGGTTAATAA 34372 28 100.0 32 ............................ GTGCTGAAGATCAGCCTCAAACGTGCGGGTCT 34432 28 100.0 32 ............................ AGCAAGAGACCATGCAGTTAGCGTTTGGCCTT 34492 28 100.0 32 ............................ ATTATCCGTACTCTGCCGCATATACAAATCGA 34552 28 100.0 32 ............................ TATAAAATGTACAAAAACCATTATTTTTATCA 34612 28 92.9 32 G..........C................ ATTCTGATGAAGCCCCAAATGAAACCGGGTAT 34672 28 92.9 32 G..........C................ CTCAACGCATTCCGGATCAGGTTCGCAGTTGC 34732 28 92.9 32 G..........C................ GGAAGCGGTTAAGCGTTAAGTCAAAAATTATT 34792 28 92.9 32 G..........C................ ATAGGCTCGCCAGGAATGTGTGGGATTTCAGC 34852 28 92.9 32 G..........C................ ACTGAGCAACTGCAAAACGCGCTAATCGGACT 34912 28 92.9 32 G..........C................ AACACTGGTAATCGTTCTGCTGCAACCAACAC 34972 28 92.9 32 G..........C................ TGAACTGCCAGCAGAAAAAATTGATAATAGAC 35032 28 92.9 32 G..........C................ AGACATGAAAATCCTCCCGCCTTCTTTGAATG 35092 28 92.9 32 G..........C................ AGTATACGCTTTTGAGTCATCCGTAAACCCAA 35152 28 92.9 32 G..........C................ ATTATCCATCTGCAGAATGCCATCAGCGTTAC 35212 28 92.9 32 G..........C................ GTAGATAGCTTGCAGAGCAGATTGCTGTTGCT 35272 28 92.9 32 G..........C................ TTGATACTGCTTAGGTACTAAATCTGAACAGC 35332 28 92.9 32 G..........C................ TCACCCTGCGATGTTGACTTGCACAGCTCAGC 35392 28 92.9 32 G..........C................ AGCAACAGCAGGCTCAGTACATTCCACAGCAA 35452 28 92.9 32 G..........C................ ACTTTGTGATCTGCTGCACTTCTTCGTCACTA 35512 28 92.9 32 G..........C................ ATTAAGCGACATGACGCCGCGCCCTTGGTCGA 35572 28 96.4 32 G........................... ACAGCGCTAAACGCTAGCGCTTTGCCGTATTA 35632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 123 28 99.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CTGGGGAAGTTAATGGCGCAAAGTTGGTTAAAGGGGCTCAGAGATTACTGCCAATGCAGTGCGATACTGCCAGTACCTGCTAATGCCAAGCAGCGATATTTTGCCCGGCGGCAGGTTAAAAGTGTACATAACAAGCGTCAACGCTCCATCAGCAAAGGCTGGCTGACGCAAGATGAAGCTATGACGAAGATTAGTGACGACTCGCAGAAGCTGCTTAAGCTACCATTTTTGCAACTAACCAGCCGTGGCAATAAACAACAAATGAATGTATTTGTTGAGCAAGGACCGGTAATTGATTTACCAACTGAGGGTAGCTTTAATTCCTACGGATTAAGCCGGCTATCCGAGAAAGTAACGGTGCCTTGGTTTTAACCCTTTTTTCTAAGCTTAGCTGCAGCCCTTAAAATTCAAGGGCTGTTTTTATCTTTTAAAAAAAAGGTAAATCTGCGGAAGCACCAACAGCTCTTTAAAAATTAGGATTTTAGTGCTTAAATGCTTTA # Right flank : AATGCGCCGCTCCTCGCTCGTTCGTCGCAGGAAAAGAAGCATCAGCGAACAGTAGGGGGCGATGCCCGGTTAGATACCGACGATGGTGGGCATATTATCGGCCACCGCTTTATGAGTGACCAAGGCTTAAAAAACCTGTTCCCGCAGGATGCAAACTTAAACCGTGGCGCTTATAAATCCATGGAAAATGAATGGGAAGACTGGACTAAGGAAGGTTATGAAGTAAAACCAACCGTCCGTTTAGACCCACCAGGTTCAGCTAGACCAGATAATATTATTGCAAATTACAACGTTCACGATCCTAAAACAGGAAAAAGAGTTTTCAGGCGACGACATGAATTTAACAATGTCAAAGGCGAAACATTTAACCGTGTGAATCGCAAAGATATGCAGGGCTACAGAGACTAACTATGAAAATTGATCCGAAATACATTCAAGAGCTTGGTGCGCTGGTAATTCGCAGTGAGGATGTTGTCGAAGAGCCAGAATGGAATGCGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //