Array 1 176752-174023 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIE01000006.1 Pasteurella multocida subsp. septica strain CIRMBP-0747 NODE_6_length_192290_cov_401.312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176751 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176691 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176631 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176571 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176511 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176451 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176391 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176331 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 176271 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 176211 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 176151 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 176091 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 176031 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 175971 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175911 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175851 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175791 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175731 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175671 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175611 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175551 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175491 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175430 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175370 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175310 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175250 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175190 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175130 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175070 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 175010 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174950 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174890 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174830 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174770 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174710 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174650 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174590 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174530 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174470 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174410 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174350 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174290 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174230 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174170 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174110 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174050 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112766-112268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIE01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0747 NODE_3_length_210043_cov_380.241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112765 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112699 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112633 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112567 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112501 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112435 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112369 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112303 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 91041-89524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIE01000004.1 Pasteurella multocida subsp. septica strain CIRMBP-0747 NODE_4_length_202569_cov_399.603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91040 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 90980 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 90920 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 90860 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 90800 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 90740 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 90680 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 90620 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 90560 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 90500 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 90440 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 90380 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 90320 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 90260 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 90200 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 90140 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 90080 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 90020 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 89960 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 89900 28 96.4 14 ............G............... TCTTTGATTAATTC Deletion [89859] 89858 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89842] Deletion [89817] 89812 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89796] Deletion [89771] 89766 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89750] Deletion [89725] 89720 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89704] Deletion [89679] 89674 28 78.6 32 ....TGA.TTT................. GACTGGAGTGAGAATGTCGTCGAAAACTTACA GCTT [89658] 89610 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 89550 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 27 28 95.2 29 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //