Array 1 320426-322114 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYA01000003.1 Streptococcus salivarius strain BIOML-A19 scaffold3_size431868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 320426 36 100.0 30 .................................... CGCAAATTCAAATAGTAAACATGTCGCCTC 320492 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 320558 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 320624 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 320690 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 320756 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 320822 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 320888 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 320954 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 321020 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 321086 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 321152 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 321218 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 321284 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 321350 36 100.0 30 .................................... ATTGACTTATTCAATGCTCGGAAGCCGTAA 321416 36 100.0 30 .................................... CCTTGCTGGAGAAATTAGGCTACTCCCTTC 321482 36 100.0 34 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTAGTNA 321552 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 321618 36 100.0 29 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCT 321683 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 321748 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 321815 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 321881 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 321947 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 322013 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 322079 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== ================================== ================== 26 36 99.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CCTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 255590-256482 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYA01000001.1 Streptococcus salivarius strain BIOML-A19 scaffold1_size477940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 255590 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 255656 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 255722 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 255788 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 255854 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 255920 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 255986 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 256052 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 256118 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 256184 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 256250 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 256315 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 256381 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 256447 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : GTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //