Array 1 4224-3858 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCP01000025.1 Levilactobacillus brevis strain LB_AVK NODE_25_length_9197_cov_39.4668_ID_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4223 36 100.0 30 .................................... TTCTTCTAGTCCCTGTGGTAAGTCCATTTT 4157 36 100.0 30 .................................... TTCTAAAGCTAAAACAAATATTGCAGACTT 4091 36 100.0 30 .................................... GAGCAACACAAACATGGAATTAGTCGACTA 4025 36 100.0 30 .................................... TATTAACCGAGCTGTTGGCTACGGCATAGA 3959 36 100.0 30 .................................... CCGTTCAGAGCTTACCAAGGCGGCCAGCCA 3893 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAACTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGGCGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : ATTTTATTTAACCAAGAAACTGACCAAGTTAGCTATTTGAAGGGGATCGTGGTGACCATAACCACTACTCATCCCACTATTACCATGTCCACCTTGCAGACGATACGTGGTTTTACTGATTTTTTTATATTGGGGATTGGCTAAGAAAATTTCTGGGGCTAGTTCTTTATTTTTCTTAGTGAAATAACTATTCACAAATGCTTTTTTAACGATAGTCAGGCGATATGTACCAGACCCCTTGATTCCCATATACTTTGGGAACTTTTTTACTGAGTGTGACCATTTCCCACGTAGTGCCTTAGGCATTCCTTTGTGCCACGTTGCGGCTTGGGCGGGTTGATTAAGTGTTGGGGCGAATAGGGACAGACTTACTGTTGCAGTAGCTATTAAGATGGATGTCCTCAGTTTATTCATAAATGCCACTCCTTTTGAGATTTAGTGTTAGGTAAATTATGAAGCTTGGTATATAAACATATAAATCCAGTATACGTAACTCTGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 116431-116826 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCP01000004.1 Levilactobacillus brevis strain LB_AVK NODE_4_length_244464_cov_39.8373_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116431 29 100.0 33 ............................. GTAACTGAATTTGTGCCGGTGTTGTCGCTGTTT 116493 29 100.0 32 ............................. GTCGAAGGCGATGTACGTGAACTGAAAAGTAA 116554 29 96.6 32 ............................C TCCCGGTTGACTGACACCATAAGCGGCCACCC 116615 29 100.0 32 ............................. AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 116676 29 96.6 32 .............G............... ATTAGTTGGTCGAATAGAAAAAAGCTAGGTAT 116737 29 96.6 32 .............G............... GGCTGAAAACGAGCTTGTAGCATTTGAACCAA 116798 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATTGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGAATCAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATACCGGTTTGGCGGTGTTTCTTTAGT # Right flank : CAATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGACGAACAGATCAAGCAAGCTGTCGCAAGTCTTAAAAAGATTGCCGCTCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCAATGTCAGCAACTGACAAGGCAGAAATTGTTGCCGCGTTCAGTAACGTGGTTTCAAAGATTAAAGATATTCAGAACTCAGATCAAAACACTGTTGATCAGAATACTGGTGACAATGCTTCAGATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGGAACGGCAGCGGCTAATAAGCGTCTTTCCGAGAATAAGTTAGTGCCAGTTAAGCCAGATTACGATACTACACCGATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48889-48325 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCP01000013.1 Levilactobacillus brevis strain LB_AVK NODE_13_length_48947_cov_42.8906_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48888 36 100.0 30 .................................... AATTGTTTTCCAATCTTGATATGCCCATGT 48822 36 100.0 30 .................................... TGGCTGCCTCCATAGATAACGATCGCTGAA 48756 36 100.0 30 .................................... TCCCAAAGGTAAATCATTAAATGATCCCGA 48690 36 100.0 30 .................................... GAATCAAGTAAATGGGAACGCTGTTCCTGT 48624 36 100.0 30 .................................... TCATTGAGGCGTTAATGTATAAACCGCCTT 48558 36 100.0 30 .................................... GCCAAGAAATCAACGACTACATCGAATTTA 48492 36 100.0 30 .................................... ACAATTACCAACAAATGCAACTCCAAGCAT 48426 36 100.0 30 .................................... TTAATGTAAGGCGAACCATCCACGAAGGCA 48360 36 91.7 0 ...........................A.C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : ACGGCCACCCAATCAATAGGGTTAAGAACATGAGCTGGAAGAATATAAGCCACTCGAG # Right flank : ACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGGCCACCATACCGCGTATGATAGAGACGATAGCTAGAAGTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 83286-83436 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCP01000008.1 Levilactobacillus brevis strain LB_AVK NODE_8_length_112960_cov_41.937_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83286 29 100.0 32 ............................. ATTGTGCGTCTTTAATAGATTTAAACTTTCCG 83347 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 83408 29 79.3 0 ....A.................CAT.T.C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCAAGGTAATCAGGCTCAAAAGCCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //