Array 1 110840-111403 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFE01000085.1 Porphyromonas gingivalis strain 11A isolate 11A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110840 36 100.0 30 .................................... CAGCCAGTTCGTTATTAAATTCCTCAATCA 110906 36 100.0 30 .................................... CAACAGCAAAAACTAATCCTTTCATTTTCT 110972 36 100.0 30 .................................... GTACGCTTTTAACTCCATATACTCCTTGTT 111038 36 100.0 30 .................................... TTCTTTGAGCTTGTCAGCGACATGCGTTCC 111104 36 100.0 30 .................................... AGCCATTCAAAAGCATTGTCATCAAACTTT 111170 36 100.0 30 .................................... GGAAGAAGATACGACTTGATGCGAAGAAAT 111236 36 100.0 30 .................................... AGTGAAACATTCCGAATTTTTCTGCACCTG 111302 36 100.0 30 .................................... CTTCATAATCTTTGTTGTTTTATATTATCG 111368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAGATGGATAGAGGAAGTGTAACTGCCGATTGTGTTGGTGCAGAGCTGTTCGTCCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCCCGATTTCCTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGATGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGCTTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATTTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGACCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGTGTGATGGGTTTCTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 54909-55520 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFE01000012.1 Porphyromonas gingivalis strain 11A isolate 11A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 54909 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 54976 36 100.0 30 .................................... TCTGTGCCGAAATCGCCCGTCAATATCAGT 55042 36 100.0 30 .................................... AGCGAAGCTCATAACAGGCGAGTGCTGGCG 55108 36 97.2 30 ..............C..................... ATTCCTGTTCTACTATATTATGTGCTACTA 55174 36 100.0 30 .................................... TATCCAGGTTGAAGATTCAATAAGAACAGT 55240 36 100.0 30 .................................... AAAGAAGCATGTCCATCTACATGCTAAATA 55306 36 100.0 30 .................................... AGGCGTCGTTGAAAGGTATTGTCTACGTAT 55372 36 100.0 11 .................................... TGTGTGTGTGT Deletion [55419] 55419 36 100.0 30 .................................... CGTCATGCCTTGAAAGAGAACCGAAATTAG 55485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 28 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCCACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 143-1031 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFE01000006.1 Porphyromonas gingivalis strain 11A isolate 11A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 143 31 93.5 34 CA............................. CGAATGGAAGACCGAGGGGAACCTGTTGTCGAAC 208 31 96.8 33 G.............................. TGATACACATGATTATTGCCATGAGAGATCGCA 272 31 100.0 35 ............................... AGTCGACACCAACGAGCTGAAGCGGCAGTTAGCGG 338 31 96.8 36 A.............................. AAAAAACACACCAATTTTTTGTCATAATTCCAAAGT 405 31 100.0 35 ............................... AAAAACACACCAATTTTTTGTCATAATTCCAAAGT 471 31 100.0 36 ............................... AACGACGTGAAGAAATCACTCAGTGAGCTTATGAAT 538 31 96.8 36 C.............................. GTTAGTGCTGAACAAAAAGAAACAATTCGCAAATTT 605 31 100.0 36 ............................... CTCCACCGACAGAAATATCACTAAGCGTTATGAAGT 672 31 100.0 33 ............................... TATTGCTGTACTTACAGGGGGTTGGTTATTTAT 736 31 100.0 35 ............................... ACTCTTGAAAAAGACTATACTGTTGAAGGAAAGGT 802 31 100.0 34 ............................... TTAAATATAAGTTCACAAAGAAAACGCCGAATTG 867 31 100.0 35 ............................... CTCAAGGAGAAACAGGCACCTTCAGTCCCGAACAA 933 31 100.0 37 ............................... TTCTTAAAATTTTCTTTGAAAGGAAAATCTAATTTAA 1001 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 14 31 98.9 35 TGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //