Array 1 3517661-3516107 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVE02000001.1 Methylosinus trichosporium OB3b MettrDRAFT_Contig106_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3517660 36 97.2 30 ..G................................. GCAGCATCGGCGCCGTCGCCCAGCAGAACA 3517594 36 100.0 30 .................................... CGCGGCGACGACGCCGATCGGATCGGACGC 3517528 36 100.0 30 .................................... CCGGCTCCCGCTTCCAATAGTTTCGCCCGA 3517462 36 100.0 30 .................................... GGCCCTATGCTGCGCATGAGCTACGACAAA 3517396 36 100.0 30 .................................... TTCGCCGAGCTCGATCACGCGCGGCATCGC 3517330 36 100.0 30 .................................... CATAGATGAGCCGCATTCGCGCATCCGAGG 3517264 36 100.0 30 .................................... TGGGTTCGCCCGGAAGTGAGAGGATGATGA 3517198 36 100.0 30 .................................... CCGACCGTCTGCGCATCGGGGAAGAACGAC 3517132 36 100.0 30 .................................... GGCGGCGCACGCTGATCATGGAGACGATGG 3517066 36 100.0 30 .................................... GATCCGCACGCATATTCGCGACCACATCGC 3517000 36 100.0 30 .................................... TTTACGACATGACGGCACCGGCGCCGGCGT 3516934 36 100.0 30 .................................... TCTGGCGGGCTCGACAAGTCGGCGGGACCG 3516868 36 100.0 30 .................................... GCGTGCCGCCGGCGCGCTTAGGCACGGCGC 3516802 36 100.0 30 .................................... TGCAAGCGGCGCTGCGTCCCGCTTTCCTTA 3516736 36 100.0 30 .................................... CTCGGCGCGCGCGAGTGTGAGAGGGCGCGG 3516670 36 100.0 30 .................................... GGCTGCTTTCTCAGGTCATTTGCAATTCGG 3516604 36 100.0 30 .................................... CTATCTTGCTCGTGCCAGTTCGCGCCAGCG 3516538 36 100.0 30 .................................... GCATGGATCGTGACGCACCCAGAGGCGCGC 3516472 36 100.0 30 .................................... GTCGAGTTCTTCGATCAGCTCAATTTCCCA 3516406 36 100.0 30 .................................... TACAGCAGCTCGTTCGCGGCGGCGTCTGCG 3516340 36 100.0 30 .................................... TCGCCACGGCCTTCGCCGCCGGCTCGATCG 3516274 36 100.0 30 .................................... CGTCACCGCCAACGCGTGAGCATCACATGA 3516208 36 100.0 30 .................................... TAATCGAATGAAACCAGCTCCCGACGAATG 3516142 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Left flank : TGAAATCCTACGATCTCGTGTGGCTGCTGCATCTGGTGGGCGACGTCCACCAGCCGCTGCACGCGACCTCGCGCTTTTCCCGGGGCCTGCCCAACGGCGATCGAGGCGGCAACACGGAAACCGTCTGCCTCGCCTTCACCTGCGGCGCGAAGCTGCACGCCTATTGGGACGGGCTGCTCGGCGATCGGGGAAGCCCGTCGGACGCCGAGGCGCTCGCGGCCACCCTGCCCTCGCCCGATGCGACGGCGGCGGCGGTCGACGATCCCGCGACCTGGGTGAAAGAGAGCGAGCGGCTTGCGGAGCAGTTCGTCTATGCCGGGCCAATCGGAGATGGCGCGGGGCCTTTCGCGCTCACGGACGCCTATCAGGCGGATGCGAAGAGGGTCGCGGAACAGCAGGTGGCGCTTGCGGGGGCGAGGCTTTCGCAACTGCTCGACAGGGCGCTTCGGTAAGCTAACTTCCCTGCCGATTTCTGTGGTAGGCTCGCGAACGACATTGCT # Right flank : CGCTTTGACGTAACGAAATGAAAAATCTGTGATTTTCGTTCTCTTGCCGGGACTAAAATCACAATAATACCAGTTGTTGCGGTGCTATCTTTTCATTTTTCGGCGATTCGCCGATCAGGAGTTTCATGCGCGCGTATTGCCGCTCGGTGACGCTTAATGTGCGTACGCTGCCTTTCGGCGGGAGGTTCTTAGTGACCCTAACGAGATGCTTTTCCACAGCTTCTTCCCCGCGCATCACGCGCGCGTAGACTGACAGTTGCAGCATTAAAAAGCCATCGTCCTTGAGAAAATTTCGAAAACGCGTAGCATTGCGCCGTTCGACTTTCGTCTTGACCGGTAGATCGAAGAAAACGAAGAGCCACATATAACGCACCTCCTCGGCTTTCATGGGGAACTCCCCTTCGGCGTGACGAAGAACGGGAGTTTTAGAATCGCCGCGCTTCCACTCTCCATTGCCTGAACGAGGCCTTCTGCGGCCTTCTCGCTCGCGACGAGAAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 3944947-3942467 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVE02000001.1 Methylosinus trichosporium OB3b MettrDRAFT_Contig106_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3944946 37 100.0 36 ..................................... CAGCTGCATCACGAGATCCTCGAGCCCGTAGGCGAG 3944873 37 100.0 36 ..................................... CCACTGGGTCTTGCCGTAGGTCGTTCCTTCTTCGAC 3944800 37 100.0 38 ..................................... TCCGCGACGGTCGCCAATGTCTCCCGCGGCACCGGGGA 3944725 37 100.0 37 ..................................... CTCTCGATGCGGAAGCCGCCGCCGTCGCAGCCGCCGC 3944651 37 100.0 38 ..................................... TATGGCCGAGCGGATCGGCCTCGGGCTCAGAGCCTATC 3944576 37 100.0 37 ..................................... GGCGGTGAAGCAGGAACTTGGGCTAACATCGCCCGAG 3944502 37 100.0 39 ..................................... GTTCAGTGCGATGAGATTTGGTCATTCACCTACGCCAAG 3944426 37 100.0 36 ..................................... AACGTCCGTCCGGCCCGCGCGAGCTTACGCCTCGTG 3944353 37 100.0 39 ..................................... CTCGGTTGCGCTATGCGTAATCGCATGGCGGCCCATCGT 3944277 37 100.0 37 ..................................... CATTCAACTCGGCGATGGCATGAGAAAGCTGCGCGTC 3944203 37 100.0 38 ..................................... GACGCGACGAACCTGAAAGCGACGTCTGCGGACCCTGC 3944128 37 100.0 34 ..................................... TTGCTGCGACTGGCACGGGCAATCGGGTGATGAC 3944057 37 100.0 38 ..................................... AACGACTACGGGGTCGAGCTGTTCGATCCGAAGATCGA 3943982 37 100.0 35 ..................................... GCCGTCCGCGGCAAGACCGCAGATATCCCCGTGAC 3943910 37 100.0 36 ..................................... GAGCGACGATCTGCGCTGCGAAGCCGTCTATGAGCT 3943837 37 100.0 39 ..................................... CGACGAGGGTGCGGATGCATGGGCACGATCCGAGGGCGT 3943761 37 100.0 37 ..................................... CTGTCGGCGAGATGATGATCATCACGAAGAACAGCCA 3943687 37 100.0 38 ..................................... GGGAATCGACTTCTCAAAGATACCGTCCTTGGCCGCCT 3943612 37 100.0 35 ..................................... CGCCGAAGAGGTTGGTATCGGAGAGCAGTTCGTCA 3943540 37 100.0 39 ..................................... TTGCCGCCGAGGCGCATGCGGCCCCAGAGCTTACGGATC 3943464 37 100.0 35 ..................................... CAGTCGCTACATCGCGTGCCTATTATCCCTCCATC 3943392 37 100.0 35 ..................................... GCGACAGGAACGACCGCGACATTGCTCCTGGGGAT 3943320 37 100.0 38 ..................................... CCCGGCGAGAAGGTCAACCCGATCGATCCGTCGCGCCC 3943245 37 100.0 39 ..................................... CCGAGTATAGCTTCTTATGAGAGACACAAGCGTAAACAC 3943169 37 100.0 38 ..................................... CTTGCGTGCGGGTTCCTGATGCGGACATCTTCGATGAA 3943094 37 100.0 36 ..................................... GCGGCGTGGGGTCCGAATCGTCCGCCGCCGTCTCGG 3943021 37 100.0 36 ..................................... ATCGAGCGCCGGGGCACCAAATCGCAGGCTTACCAC 3942948 37 100.0 36 ..................................... ATATAAGATCGTGGAGCGGAAGGGCTCTCTCTACCC 3942875 37 100.0 39 ..................................... CTCGGCGGCGTCGATCGGCGCGGTGATGGCGATCTCCGC 3942799 37 100.0 38 ..................................... GCATTGTCCCGCATCTCCAAACGCAAGAGACTTGTTGT 3942724 37 100.0 35 ..................................... TCGGCGACCCGACGGATGGATATAAGGGATTCTAT 3942652 37 100.0 38 ..................................... ATCATGTTTTACGGGATGATTCACGGCACGTTCACCGG 3942577 37 100.0 37 ..................................... TATGCAGGCACCGCGCGATCCGCAGGCTCACCTGCGG 3942503 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 100.0 37 GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Left flank : CGCAGAGGCGAGACATTGCATACCGGCCGAGCGCCAGAAAGCCGCCTTCGAGGGCCGCTGGCGCATCCCTTGGGTATTGGCCGATGTGGTCTCGCTCGCTCGGCCGGTCCCCTATGTTCATCCGCGAGGAGCGGTGACATGGGTCGTGCTCGCGGACGACGTCGCCGCGACGATCGCCGATGCGCTCTCTGCGCCATAGCGTTGGGCCGGGGCGGCGCGAGGCGCCGGGAGCAGGAGCCGCCCGCGCTCCGAGCACAGGCGCGACCCCCGTGAGGAATCGAGCAGTTTTCTAAGACATCCATACCTCGGCGTGGCTACGAAAACCGCGGCGGCGGCGCCAGGCCGGCTCCCCTTATTGGGCTTTCGCAGCACCGACGCCCGTGTGACGGACGCTCTTGTGCTTCCGAACATTCCGTCCCGAAGCCCAGCCTCTGCGCTGTGGCGACGCTTGCTTCGTCGAGGCGGAGAATCATGGCCGAACGCGCCGCCGCTGTGGCGGG # Right flank : CGCCTGCTCGCAGCCGGCGGATTCGAAAGCCCGAAGACCTTCGTTTGCGAGCGGTGGATCGCCGCCGCTCGTCCGCCGTCGCCAGAGCGTCGGCCCGAGGTGCTCACGATGACAAACAGCCTTGCAAAAACAACCAATTGCGACAAGCGCGAGCGCTCCCCGGCGAATCCGCCCCGTCGGAGCGCTCGCGCGCCTTCGGCAGCTTAGCGTGAACCGGGTCAGATGACTATCGCCCGTCGCTCGATCGGCGCGAAGGTCTTGCCGAGGCTCTCCACGGCGAAATCGACATCCTCCGCCGGGCCGAGATCCATGATCAATATGTGATCCTCACGAGGATCGATCAGCGTCTCCAGCGTCATCGCCATCTGCGCGCGTCGCGACCCGTCGAGCCGGCAATGGAAGACGGAGAGCTGCACCCAGCGGCCATAGCCGTTCATCGTCTTGAACACGCGGCGCCAGCGCTTCTGATCGCCGATGTCATAGGCGACGATGTAGGAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //