Array 1 1953714-1953969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038461.1 Staphylococcus aureus strain O217 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================= ================== 1953714 27 100.0 29 ........................... CATTATCGTAAGCTGACTTTTTGTCAGCT 1953770 27 96.3 29 ......................T.... TTGCCTATAGAAATTGGTGTTCCAATTTC 1953826 27 100.0 29 ........................... CATTATCGTAAGCTGACTTTTCGTCAGCT 1953882 27 92.6 29 ................C.....T.... TTGTCTGCAGAAATTGGTGTTCCAATTTC CT [1953897] 1953940 27 81.5 0 ...A..............T..AT..A. | GA,G [1953957,1953962] ========== ====== ====== ====== =========================== ============================= ================== 5 27 94.1 29 TCTGTGTTGGGGCCCCGCCAACCTGCA # Left flank : AAATGAAATGCCTGTATCTGCATAATAGCCATTCTTCAATGCCGATACATCAATATTTACTAAATCTCCTTCACGAATGACACGCTTACTTGGAATCCCATGTGCCACCTCTTCATTAACACTAATACACGTTTGACCAGGAAAATTTTCATCATGAATTGGCGCTGAAATAGCGCCGTATTCTTCAAATAACTCTTTCGCAATATTATCAAGCTCTTTCGTAGTGATACCTGGTTTGGTTGCAGCTTGCATTGTATTGCGCACTTTAGCGCATATGTATCCAATTTCTTTTAACGCTTGTAATTCTTCTTCTGTTTTTACAATCATTTTATCCCGTTCCTTTTTTATATAATTATAACTTATTATAGCAAAAATTCTTTGATATACTAAAGATGTTACTTTAGTATTTTGGAAAGTGAGTGGGACATAGTGTGATAAAGAAAATTATTTCTTAATCGTCCCCAACTTGCATTGCCTGTAGAATTTCTTTTTTGAAATTC # Right flank : AAAATGCTTGTTACAAGTGCATTTTATTTCAGTCAACTACTAACAATATAACATTGTGGAGCCCAGAGCTTTGATTAATGTATATGAAAGTCAAAGTAATGCATAAGCATGATTATTTCAAATGTTTTACATACATGAACTTTTCCAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGGTCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACGGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATAAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACATATGCATTGAGTGCGACGTTCACGATTTTATTCTGTA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGTGTTGGGGCCCCGCCAACCTGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2284278-2284081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038461.1 Staphylococcus aureus strain O217 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================== ================== 2284277 26 92.3 30 A...A..................... AGGTGACGAAAAGTCAGCTTACAATAATGT 2284221 26 100.0 30 .......................... AGGTGACGAAAAGTCAGCTTACAATAATGT 2284165 26 100.0 29 .......................... GAATTCCAAAAAGAAATTCTACAGACAAT AAGG [2284153] 2284106 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================== ================== 4 26 98.1 30 GCAAGTTGGCGGGGCCCCAACATAGA # Left flank : GCACTTTGAAATTGATCCTGTAGAACCAAAATATTTTGGGGAAGTAGCAAAATATTATCGACATAAGGATAATGGTGTTCAATTTGGTTTGATTACAAGTGTTTCACAATCATTTTGTTCTACATGTACACGGGCAAGGCTGTCATCAGATGGGAAGTTTTACGGATGTTTATTTGCAACTGCCGATGGATTTAACGTTAAAGCGTTTATTCGTTCTGGCGTGACCGACGAAGAATTAAAAGAACAATTTAAAGCTTTATGGCAAATAAGAGATGATCGATATTCAGATGAGAGAACTGCTCAAACAGTTGCCAATCGTCAACGTAAAAAGATAAACATGAATTATATTGGTGGTTAATGTGTAGGAACCACTACATATTAAATCATTAGAGATTCTTTAATATTTCTGTCTTACTCCCTAAAATACAATATTATTTATTAAAGTAAAAACGGTCATATCTATGCCAAATTTAATAGAAATGATCGTTTTAAATATTTTT # Right flank : GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAACAACGAAATAAATTTTATGAAAATATCATTTCTATCCCACTCTTAAGAATCACTACATAATAAATCTTTAGTGGCTCTTTAACATTGTTGTCACACTCCAAGTCATTGAGTTGTAATATATCTTTTTTAGGTATAAATGTTGTCGAATAAACAACAAGTTGTCCAAAAGATATAAATCTAAACAAGATATAGCCAGCAATTTAATATTTGTAATAGATAAAATGCTAAGTTTGATATATAATAAATTTAAGTAATTGTATAATAATATGAATTACAAACATCTAAGAAGAAACATAGGAGGCATCATATTATGAGTAATAAAGTTCAACGTTTTATAGAAGCAGAAAGGGAGTTAAGTCAGTTAAAGCACTGGTTAAAAACAACACATAAGATTTCAATTGAAGAATTTGTAGTACTTTTTAAAGTGTATGAAGCTGAAAAGATTAGCGGTAAAGAAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGTTGGCGGGGCCCCAACATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //