Array 1 586815-586119 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMQP01000002.1 Sphingomonas sp. Leaf412 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 586814 36 100.0 30 .................................... GTGACGTACAGGTTGCCCTCGAACCCGTCA 586748 36 100.0 30 .................................... AGCCAGAACGTGCGCTCGCCTACGGTGTGC 586682 36 100.0 30 .................................... TTGGGGGTGTTTATCGCACAGGGAGCGCGT 586616 36 100.0 30 .................................... CCGCCTCGTCCGCCCCAGATGGCCTTGAAG 586550 36 100.0 30 .................................... GTCACGATGGATATTGAGGTGCCCCGTAAC 586484 36 100.0 30 .................................... GCGCCCGCCGTAGCGATGCAGATATTGTTC 586418 36 100.0 30 .................................... GCCCATGTGTTCAACCCGAATAGCGTCCGC 586352 36 100.0 30 .................................... ACGCGCTCCAACCGGTTGGCACTGTCGATC 586286 36 100.0 30 .................................... CTCGCGGCGTCGCGCTCCCTTTTGACACTG 586220 36 100.0 30 .................................... GAACGGGTGGGTGCATTGGCGCGACTTCAC 586154 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GGCCTAGCAGTTCAGAAATCGCAGGCCAACAGCAAC # Left flank : CGTCCGTCTCCTCACGAAGGCGGACTCTAGCTCAAACTGGCAGAGTTTCAGGGGAGCACGTCAATATCGATGTCCCATCCTCCGATGCGCC # Right flank : CGCCGTCCATGTCTACCCGCCGGTTCGCAACCAAGCCCGACGGCGGCCGTTCCCGGCAACACCCCGCCTATACCGCCACATCGGCCTTGATCGCGGCATGGGGCACATAGCCCTGCACCTCGAAATCGCTGATGCGATAGCCATCGATATCGTCGGGCTTGCGGATGAGCTGCATGGTCGGAAATGGGCGTGGCTGCCGTCCCACCTGTTCGCGGGCCTGTGGCAGGTGGTTGGCGTACAGGTGAACGTCTCCCCCGACCCAGATCAGTTCCCCCGGACGAAGGCCCGCCTGCTGGGCGAGCATCAGTTGGAGCGCGGCCGCGCCCACGAAATTGAAGGCTTTTCCGGTGTGCGGTAAACCAGCCTCAATCGCTACGGTAGCCACGTTTTTCTCCTCTGACGCTAGTGCGCCATATACCGACAGAGGTCGATATCGGTAATCCATAGGAGGGGCCCGCGGGCATCGCCGCGCGCAGCCCAGAGCGCTGGCGGTGGTGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTAGCAGTTCAGAAATCGCAGGCCAACAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1484644-1486065 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMQP01000003.1 Sphingomonas sp. Leaf412 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1484644 36 100.0 30 .................................... GCAAGGTGTGGGTGGATGAGTGCTATATCC 1484710 36 100.0 30 .................................... GTGTCGCCTGTAGCCCACCAGCGCGCGAGG 1484776 36 100.0 30 .................................... AGGTCGAATTCGGGAGCGGGCGGCAGTCGC 1484842 36 100.0 30 .................................... AACGCGGGCGCGGACCCGGCGGAACAGCAG 1484908 36 100.0 30 .................................... CAAGTCCAGCACGGCGCGCGCGCGGCAACC 1484974 36 100.0 30 .................................... AGCGCGATGGGCGCGATCGCAACGGCGAGC 1485040 36 100.0 30 .................................... TTCAGGAAGCGGGTGGCCGCGCCGACGGCA 1485106 36 100.0 30 .................................... CACCGGCGCGTCGTCGCCAACGCCATCGAC 1485172 36 100.0 30 .................................... TAGCCGCCCATGCGCCTTCGGATGCGTTCT 1485238 36 100.0 30 .................................... CCTTCGAATCGGTGGCGCTCATGCTCCCCG 1485304 36 100.0 30 .................................... TGAGCTATAGCAAATGTCAATTCAAAAGTA 1485370 36 100.0 30 .................................... AACCGCGACGATTACCGCGCGAGGTGGCGG 1485436 36 100.0 30 .................................... GGCTTTGACTACGACGCGGATGGGCTGGGC 1485502 36 100.0 30 .................................... CGCGTTAGGCTGTCCGCCGACGCCCGCAAC 1485568 36 100.0 30 .................................... ACGCCGGCAAACCGTTGGCATCGTTAAAGC 1485634 36 100.0 30 .................................... TCCCGATCCGCATCTTGCGTCCGTGGTCGA 1485700 36 100.0 30 .................................... AGAACCGGCAAGGCTGTCACGGGGAAGGTT 1485766 36 100.0 30 .................................... AAACGCTGGAACGCCATCGTCGCGGCCTCC 1485832 36 100.0 30 .................................... TTCTCGTCGACGGTCTTCGGATCGGGCGTC 1485898 36 100.0 30 .................................... TCACCCCGGCAGCGCCTGTCACCGCAACCT 1485964 36 100.0 30 .................................... GTCATCCCCAACGTGTTGCTCGTCGCCGGC 1486030 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GGCCTAGCAGTTCAGAAATCGCAGGCCAACAGCAAC # Left flank : TCGATTCCCGACCTCGCCCTGTTCGCCCCGCCCGCCCGCGCCGGCTGGGAAACCCTGACGCGCGCGCTCGACCCGTTCGAGGACGCATGAGCGATGACGCGCATCTCAGCGGCTATCGGCTGATGTGGATATTCGTCATGTTCGACCTGCCGGTCACGACGAAACAGCAATCGCGCGAGGCGACGCGGTTCCGCGAATTCCTGCTGGATCAGGGGTTCGAGATGAGCCAGTTCTCGGTCTACGCCCGCTTCTGCAACGGCCGCGAAAGCTACGATTCGCACCTCCGACGCATCGAGTATAATCTCCCCCAAAAAGGAGAAATCCACATCCTCACATTCACGGACAAACAATATGAGAATATCGTCCGCTTCTCCAGCCAGCGGCGAAAACGACCACGGAAGAATCCGGACCAGCTCGCGCTATTCTAACGCCAGCCACGAAATTCGCTGGACCGGATGCTATCGTTTCGGCCGTTTTCATAACGGCTTACGACAACATCC # Right flank : GATATTGACGTGCTCCCCAAAGCTCTACCAGTCATAACTGGAGTCCGGGGTTGGTATGGTGCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTAGCAGTTCAGAAATCGCAGGCCAACAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //