Array 1 735863-736135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009907.1 Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 735863 29 100.0 32 ............................. CCAAAAGCCGTAGCTGAAAAGGCTAAATGAAA 735924 29 100.0 32 ............................. TACTGATTATTTGAACGGCTTAACCGATGATC 735985 29 100.0 32 ............................. GTACTGTTACTGACGTGTTTAATGATAATGCT 736046 29 96.6 32 ............................T AGGGTATAGTCTAAATCCCCAACCATTTTTGG 736107 29 82.8 0 .......................TC.GAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTTTTCTCCACGTAAGTGGAGGTGATCCC # Left flank : TGCCTGAAATTGAAGAAAACGATCAGTCAGTGTTAGGCGTAGTTGTCTGCAGCAAAGGCTATCCAACGCATCCGGCTCCTAATGTGAAGATCGGCAAGTTGCCTGAAGGTACTAATACCTATATCGATTATGCCAACGTGAAAGGTGATTTGGATAATCTGACAGGTGATGGCGGCCGCCTGTTTATGGTGATTTCTGAAGCTGACAATTTGGTCCAGGCGCAAGATAATGTTTATTCATATTTGAGCAAGCTTGATCTGCCAGATTGCTTCTACCGCCATGATATTGGCAATTGTACTTTGAGAGATTAGATGTATGAAGAAAGTCCCGTTTGGGGCTTTTTTAGTTTGGTGAATATTTATGGGAGTGAAGAATAAGAAATACGCTGGTATAATTATTGTTGTATAAAATACAAACTGAATGAATTTCAGCTTTTTATTAATTAAAAATGGCTTAACGACGGGATTCTTTTAGGGTTTTATGTCGTCCCTATTGAACCT # Right flank : GGATCAGTCGTCTAACAGGGAAGACAGGCTTATTTGATATTAATAAGCAAGATATGGGTCCAATTCCCATCATCCTCAATATTTGAATAAAGTAAAAGCTCTTAGTTGTGAAAACTAATGGCTTTTTTGATGGATTAGTAATATTTTAGATCATCCTAAATTTTCTTTTATATAATAGGCTTGTATTGGGAGTAAAGGAGAAAATAACAATGTTATTGGCATTGGTTTGTTTAACATTTGCTGGTGTAAGCATTTCTACCGCTCAACCAGTTCAAGCCATAAGCAAGTATTCTTAAAAATGGCATACTATAAAAACTACTGAAAAAGTTTATGCCTACAAACCATATGTACCTCGTGGTGGTGCTATGTATCAAATGAAATTCATTCATAAAACACCGATCAAGAAAGGCACGTATCTAAGATTGATTCGTCTAAGTACTTCTTATCCATGGGAGATTATACGTGGCAAAAATCATTTGGCAATTTTAAGAAGAGATGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 890302-891797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009907.1 Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 890302 29 96.6 32 ............................C ATATCTGGATCGTTAAGTTGACGAGTACCAGT 890363 29 100.0 32 ............................. AAAGAGAATGGAATAGCAGTGCTAATGGGCAA 890424 29 100.0 32 ............................. TTAATCAACGTTCAGCAAGGCAATGCAAGTGA 890485 29 100.0 32 ............................. AAAAATATTAGATTAATTGATAACTTGAACAA 890546 29 100.0 32 ............................. TACAAGTGACCGTGGATGAAGCCCGTAGAAAG 890607 29 100.0 32 ............................. AATGATGATCCAGATCTTGCAACAGATGAAGT 890668 29 100.0 33 ............................. GATTTAACTGATACAAAGGTTATGAACGAGCTA 890730 29 96.6 32 ............................C AATGAACCATAAAGAAGTAGCAGAATTAAGCA 890791 29 100.0 32 ............................. ACAAGTTGTGATCTTCGAGCCATTTCTTGCTT 890852 29 100.0 32 ............................. ACCACCGTTGGCATACCAGTTATGAGCTTTTC 890913 29 96.6 32 ............................C TCGTAACCAATCCCAGTAAAAATGGAGCTAGT 890974 29 96.6 32 ............................C TGTATACGCTACTAGTATAGTCTTGTTTGGTG 891035 29 100.0 32 ............................. CTACAGATGTTTCAGCAGATAAAGTTAATAGC 891096 29 96.6 32 ............................C GCAGATATTAGACACACCTTATTCAATCAAGT 891157 29 100.0 33 ............................. GGTGATGACTGGTATCCAGTGGCTGGCGGTGGA 891219 29 100.0 32 ............................. TCTATTGATACTTCTAAATTTGACATGACTTT 891280 29 96.6 32 ............................C TTTGGATATTTCAGGCGCTGAAAAGAAAATCA 891341 29 100.0 32 ............................. AAGCAATTTTGAAGTTAGCGAACATTTTGGCG 891402 29 100.0 32 ............................. TTCAAAGTCTTTTGTCTTTTGTGATATTTCTC 891463 29 100.0 32 ............................. CAGCTTATTACAGCCTGCGTGATTGCATGTTT 891524 29 96.6 32 ............................C ACCATCGCCAACTTAATCCATCATTTTTATCA 891585 29 100.0 32 ............................. AATCGTCTTTAAATTCTAATATTCCTGTCCAA 891646 29 100.0 33 ............................. ATAAGAACCAACTCCTACTCCTACAGCTACTGC 891708 29 100.0 32 ............................. GAATTATCCAAACTTAATAAGTAAGTCTTGCC 891769 29 89.7 0 .......................A...TA | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTTGGGCGTTGAATCTTTACTTCAGTGGCATCGATTAAGACAACATCGTCTGGCTTGATTTCTTGCTTGCCAATGTTAAAGCCATGCTTAACCAAAGTCTCTTCGGCCCAGTGGCTTCTTCTGATCAGGTTGCTGTCATGCACACCGTAATCGGCAGCTATTTGTTCATAAGTACGGTATTCCTTGAGGTACTGCAAAGTAGCCAGAAGCAGGTCTTCAATTGCCAGCTTGGGCTTTCTGCCGCCTCGGGCATGCTTGACTTGATATTCGGCTTTTAATACTTTGACCATTTCGTCAAAGACAGGCTTGGCAACGCCGATCAGACGCTTGAATCTGGTATTGTTTAAATTTTTAGCTGTTTCGTATTTCATAATTTAAGATTATAGCAGATGTTTCGCAGTAACTCTAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGTGT # Right flank : AAAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAATTGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCAATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCAAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAGGTGCAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 902441-903201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009907.1 Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 902441 29 96.6 32 ............................T ATAAAGGCTCGTAATTTTGGCTTTATTATTTA 902502 29 96.6 32 ............................T ATTGCCGGATTGGCCCCCAATGACTTATCTGT 902563 29 96.6 32 ............................T AAAAGTCAATAAATATTACAAAAATAATTTCA 902624 29 100.0 32 ............................. CAGCTTCAATTATCATTCTGGTGTAAAAAGCA 902685 29 100.0 32 ............................. CACCTCTATGTTAATGCATATCATTTTGCGAC 902746 29 100.0 32 ............................. AACTCCGCCAATAAATAATTTTCTCATTTTTC 902807 29 96.6 32 ............................T AGCTAATAAAATAGTGAATTATTTTAGAAGTG 902868 29 96.6 32 ............................T ACCCATTCACGCAAAGCTTCTAAGTCTCTAGC 902929 29 100.0 32 ............................. GAGTACTGCGATTTAATATAAGTGCCCTAGCT 902990 29 96.6 32 ............................T AAGTCAATAGTTTTATGATTTTTTTGTAAAAA 903051 29 100.0 32 ............................. TCAACCCACGACGGTAACCACACCGCAACCAA 903112 29 100.0 32 ............................. ACTGTTAATTGTCTTAATGCTGATCATTTCAG 903173 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAAAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCATGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : CTTGACGATTTAAGTTAGATAATTCTACTTTGTCTGGATCTACTAATATCATTTCAGAAATGCCCATTAAAGCCATAGCTTGTGCAACCCAACTACCAGTTCCACCAATTCCAATAATTGCAATTTTTTTCTTAGATAATGATTGTATATTGGAAAATTGAGAAAAAACATTTCTTGTTTAAACCATCTTAAATTAGAAATATCTTTTTTTTATTAGTTTTTTAATAATATTATCAGAAAGTAATGCATTAAATGCATTTAAAAATTCACCATGCTTAACATTAGGAAATTTTACTAATAATAATGAATATACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGACTAGACTCAAGTTGTAGTATCAAAAAGAAAAGAGTCTGATCTGATTGAACTGCCTCAAGCCTAAGCGTTTTAGCCACCATTTACAAGTTAGTTTTAAAGATTTAGTGATAATTTGTCGGCACTGGTATCGTTTGTATGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //