Array 1 1684657-1686273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020410.2 Corynebacterium diphtheriae strain FDAARGOS_197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1684657 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 1684718 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 1684779 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 1684840 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 1684901 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 1684963 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 1685025 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 1685086 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 1685147 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 1685208 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 1685269 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 1685330 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 1685391 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 1685452 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 1685513 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 1685574 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 1685635 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 1685696 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 1685757 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 1685818 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 1685879 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 1685940 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 1686001 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 1686062 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 1686123 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 1686184 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 1686245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1906766-1906284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020410.2 Corynebacterium diphtheriae strain FDAARGOS_197 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1906765 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 1906703 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 1906639 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 1906575 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 1906511 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 1906447 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 1906383 36 100.0 28 .................................... ATGGAATTGTTTTTGAGTGTTGAACCGC 1906319 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 96.9 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //