Array 1 2814-1981 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSJ01000014.1 Achromobacter sp. DMS1 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2813 32 100.0 36 ................................ CAGAGCATCCCCGCGCGTGCGTATCGATGGCGAGGG 2745 32 100.0 34 ................................ GCGAGCTTCGCGCCGGGAACGCCGGGCGTGTACT 2679 32 100.0 35 ................................ TTCGCGAGCCTCGGCCACGATGGGGGCACGTGCAA 2612 32 100.0 35 ................................ TCGGACGGCGCGGAACACCTCCACCATGGACGCGA 2545 32 100.0 36 ................................ GCCCACGCCTGCGGCCTACGCCTGATCGACACCAAC 2477 32 100.0 37 ................................ CAGTCCAAGTTGGCCATCGACGCCATAGTCGCGCAGA 2408 32 100.0 33 ................................ GAGATTCCACCACTGGCCAGTACTGGCAGTTTG 2343 32 100.0 34 ................................ GACGTGCCCGCCACCGCCGTGTACGACACCCCCA 2277 32 100.0 35 ................................ GGATGCGAGCGCGTCACGCTCGGCCAGTAGGTCGA 2210 32 100.0 34 ................................ TACGACCTGAAGGGCAAGGGCGCAACGGATATGT 2144 32 100.0 34 ................................ TGCGTCGCCCACCGCATCGCATCGCTTATCTGGA 2078 32 100.0 34 ................................ AAATCACCCCTCACCTTCGACGAGCTGCGCGCTA 2012 32 96.9 0 ..........................G..... | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.8 35 GTCGCGCCCCGTGTGGGCGCGTGGATTGAAAC # Left flank : GCCATTCCTGTGGAAGTGAGGTCCGTCGATGATGGTACTGGTCAGTTACGACGTCAGCACCACGGACCCGGGCGGCGCACGCAGATTGCGCCGGCTTGCCAGGGCCTGCCTGGACTACGGTCAGCGCGTGCAATTTTCCGTATTCGAGATCGAGGTGGATTCCGCCCAATGGACCATCTTGAAGGCCAGGCTGATGGAAACGATCGATCCGGTCCGGGACAGCCTGCGGTTCTACTACCTGGGTCGGCAATGGCGCAGCAAGGTCGAGCACGTCGGCGCCAAACCCGTGTTGGACCTGGATGCGCCGCTGGTATTCTAGGCGACCGCGAACCCTAAGTGTTCGTGCGTGCCCCCGTGAGGGTTCGCGACTTTTCATGTCTTTGTTTTTGCTGAGGATTTTGTCTTGTGGCGGCGGCTTGGCGGCGCATGGACCACTTTGGCCTGCGGTTCGCGGAGGCCGCGCTTTTTTTCTTGCTGCGTGAAGGAATTGTGAAGACCCG # Right flank : ACATCATCCTGCCGAGGGCGCTTGCGCGACATGGCGCCGCTGCTGCAGGACGCCGGGATGCGGATTTCGGCTGAGCTGGGCCGGCAGGCGGCACGAGCATAGCGGGTTGATTTCGATGGCCCCGAATTCCCTGCGCCGCGAGTGCGCCAGGCGCGACAGCGCCACCAGCGCATCGACGCCGCATGGCGGCGTGGCCCTTGATCTCCCGGATCATGGACAGGGCTTTCGCGCGGCCGAAGGGGCCAGGTGGAAGCGCTCGTTGCCGAGCCCTGCCCCGAACGCGCCCAGGCCGGACATGACTACCGGGCCGGACACCGGGTCGTTAGGTCGTTATGTACGTCTGCAATGGACTCCACGCCAGGGCCCGCCATGGAGCGACCGGCACGCCGTCGATGCGGGCTTCGGGGCTGTGCCGCCGCACGGCGGCCGGGATGCCGTCGCAGGCCGCGCGCTACGTACGATTCCGGCGGCCATCCGCATCCCGGCGGTGAAGGCAGGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1581-1369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSJ01000040.1 Achromobacter sp. DMS1 scaffold40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1580 29 100.0 32 ............................. CATTCAGGGCGGCAATCAGGTCAACATAACCG 1519 29 100.0 32 ............................. TTGTCGCGCGGCTCACGGCCACAGGCGGCCAG 1458 29 100.0 32 ............................. ATACTGAGGCAACAACAGATCAAACGACAGGG 1397 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : GCCGTTGCCGCCGTGTTGGCTGAGGCGGCCGCCGGCCGCTGCGTGTGCTGGATCCGGAACACCGTGGAGGACGCCCTGCGGGCCTGCGATCTGCTGGCGGCCAGCCTGCCCCCCGATCAATTGACGCTCTTTCACGGAAGATTCGCCATGGGCGACCGGCTCGACATCGAGGACCGCGTGCTGCGCGATTTCGGCGCGCGCTCGGGTCCGCAGACGCGTCGTGGCCGTGTGCTGATCGCGACTCAGGTGGTGGAGCAGTCGCTTGATATCGATATGGATGCAATGGTCACGGACCTGGCGCCCATTGATCTGCTCATCCAGCGCGCCGGTCGCCTGCAACGGCATGCCCGCCTGCCCGACGGCACGCCCGCGCCGGACGGCATCGAGCGGCGCGCGCCGCCTGTGCTTCACGTGCTCTGCCCCGTTATTGAGGACGAACCCTCCGCGGACTGGTATGCGAGCCTGTTTCCCAAGGCGTGCTACGTCTATCCGAACGTGGG # Right flank : TCCTTTGGGTCGCCAAACATCTTGCCGAGGCCGAGTTTGTCTCGCGCGTGCGGGCCAATCCGGGCAAGGACGGATACGCGAATGCGGGGGCAGGCGGAGTCAACGACCTGGGCATGATCTGGTTCCTGCAGATCATCGGCGGCAAGATGAACAGCATTTCGTACCGCGGGTCCGCGCCCGCGCTCACCGACACGGTGGGCGGGGTGGTGCCGGTGATTTTCGACAACTTCCCCTCGTCGCTGCCCTATGTGAAGAGCGGCCGCTTGCGCGCGCTGGCTATTACCGGCGCGGTCCGCAATCCGCGGCTGCCGGAACTGCCCACCTTTGCCGAGCAGGGCTACAAGGACTACGACGTGACGGCCTGGTACGGCGTGGTGGCGCCCGCCGCCTGGCCGAGGACGTGCGCGACAAACTGGCCGGCGCCTTCGCCCAGGCCGTGCGCGATCCGGCCACCGCCGCGAAAATGGAAGAAAGCGGCGCCTTTCCGCTGGGCAACACGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5418-8258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSJ01000107.1 Achromobacter sp. DMS1 scaffold107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5418 29 100.0 33 ............................. CCATTCAGGGCGGCAATCAGGTCAACATAACCG 5480 29 100.0 32 ............................. TTGTCGCGCGGCTCACGGCCACAGGCGGCCAG 5541 29 100.0 32 ............................. ATACTGAGGCAACAACAGATCAAACGACAGGG 5602 29 100.0 32 ............................. TCCTTTGGGTCGCCAAACATCTTGCCGAGGTC 5663 29 100.0 34 ............................. AACCCCGACCGGGCGACGATCGAGGCCGTGCTGC 5726 29 100.0 32 ............................. CACATCAACGACGGCGGACCGGCGTTTCCAGT 5787 29 100.0 32 ............................. GAGGGCAGGCTGGCCGAGCCATTCGGGTTCTA 5848 29 100.0 32 ............................. CGCTTCACGCTGCAAGAACAAATTGCCGTACG 5909 29 100.0 32 ............................. TTTGCCTTCGTCGAGGGCAACAGCCTTGAAAT 5970 29 100.0 32 ............................. CGGCCATCCGACCTAATCGGAGCGTCGAAATA 6031 29 100.0 32 ............................. CGTGGGCGAGGAAGCAGCCAGCCCCGAGAACG 6092 29 100.0 32 ............................. CATTGCTGCGCTCCTGGGCTAGATACCGAAGC 6153 29 100.0 32 ............................. GTTAGAACGAACCCAGCACGAAACGTGCACGA 6214 29 100.0 32 ............................. CCATCGCGCAACTGGAATCCGACATATTCGAC 6275 29 100.0 33 ............................. GGAAACAACAGCGCCACTACAGGGCGAGGCAGA 6337 29 100.0 32 ............................. CGACAGGCGCACTACCCCGCACCCATTGTGAC 6398 29 100.0 32 ............................. GGGCTGGCCACTGCTTTTGCCTGAGCGCAGCC 6459 29 100.0 32 ............................. ATCCCGAGGTGCTGCTTGAATACCTGGAGGGG 6520 29 100.0 33 ............................. TACGCCGGCCGCGTGTTCGACGTGACCACGACC 6582 29 100.0 32 ............................. ACCTACTTTTCCACGCCGTCGAGCATGGCGCA 6643 29 100.0 32 ............................. TGCAGGTGGTGCAGGAGCAGCAGCGGACAGCT 6704 29 100.0 32 ............................. GACGCGCATAGCCTGCAATTTCTGCTCATAGG 6765 29 96.6 32 ............................T GACCACCGAGGACACCAGCAAGGGCACCAAGA 6826 29 100.0 33 ............................. CTCACCAGCTCGGGGTCGATCAGCTCGTCGGCC 6888 29 100.0 32 ............................. TCCTGCCGGATAAAACCGACAGGCCGCCCCAG 6949 29 100.0 32 ............................. CAGCTTTGCAAATACAGCCACCGGCCAGTTAA 7010 29 100.0 32 ............................. AGCGTCGATCAGCAGCGCGTCAGATTTTCCGC 7071 29 100.0 32 ............................. TCGTGGCCAGGCAGGAACACCCGGCGGGTGCC 7132 29 96.6 32 ............................A CCATGATCTACCGGCTGGTCAAGCGCGGTGAC 7193 29 100.0 32 ............................. CAGACGTGCGGCGCCGGGCCGTAGTGGCAACC 7254 29 100.0 32 ............................. GCGCAGGCCATGGATAGCCTGATCGACAAGCT 7315 29 100.0 32 ............................. GCGCCCTGTACGGTTTCGATCACACCCACGTT 7376 29 100.0 32 ............................. GAAAACAGCATCTGGCAGATGGACTATGTGGG 7437 29 100.0 32 ............................. GCCGCGCGCGATCAGCAACTGTGCGCGGTGAT 7498 29 100.0 32 ............................. CCGCAGCGGCGTTGCTCACCGAAAACCGGAAC 7559 29 100.0 32 ............................. GTCACGCGATTCCAGGCGCGCGCGGCGCTCAT 7620 29 100.0 32 ............................. CCAGCCACGATCCGCCTGCGCAACGAGTGGGT 7681 29 100.0 32 ............................. GCGGTGGCACATGGTGCGCAGGTCGCGGACAA 7742 29 100.0 32 ............................. CCGTCGTGCCGCTGCTCGGCAGCACCGAGCAG 7803 29 100.0 32 ............................. CATGAGTGCCGCCCTGAGTCTCCAGTGGCTCG 7864 29 100.0 32 ............................. CCGACGCCAAGAAGGAAAAGTGGTGGCGCCGC 7925 29 100.0 32 ............................. GTGATTGGGGAGGCTAGCCCCCTCGATTGGTT 7986 29 100.0 32 ............................. GCGCAAGCCCGGGATGAAATAGGACAGCTTCA 8047 29 100.0 32 ............................. TCCAGGCGAACCAGCACGGCGCCGTCGCTCAA 8108 29 100.0 32 ............................. CGAATCGAGCGCCGCCGCCCGTAGTAAGCGTG 8169 29 100.0 32 ............................. TCAGCATGACGACGAAACACACGCCCGGCCCA 8230 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================== ================== 47 29 99.7 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : GCCGTTGCCGCCGTGTTGGCTGAGGCGGCCGCCGGCCGCTGCGTGTGCTGGATCCGGAACACCGTGGAGGACGCCCTGCGGGCCTGCGATCTGCTGGCGGCCAGCCTGCCCCCCGATCAATTGACGCTCTTTCACGGAAGATTCGCCATGGGCGACCGGCTCGACATCGAGGACCGCGTGCTGCGCGATTTCGGCGCGCGCTCGGGTCCGCAGACGCGTCGTGGCCGTGTGCTGATCGCGACTCAGGTGGTGGAGCAGTCGCTTGATATCGATATGGATGCAATGGTCACGGACCTGGCGCCCATTGATCTGCTCATCCAGCGCGCCGGTCGCCTGCAACGGCATGCCCGCCTGCCCGACGGCACGCCCGCGCCGGACGGCATCGAGCGGCGCGCGCCGCCTGTGCTTCACGTGCTCTGCCCCGTTATTGAGGACGAACCCTCCGCGGACTGGTATGCGAGCCTGTTTCCCAAGGCGTGCTACGTCTATCCGAACGTGGG # Right flank : ACGCAACCCGGATTACGGCCGGATTGCGCCGGTTTTTGCATGGCGGGCGGCCGCCCGTTCGGGGCGCCGGGTCGGCGCGATTCTCTGGAGCGCCAGCTAATGAAAGCCGTGCCTTACTCTGTGGGCCGGCCTGGCCATGCCTCGCGCATCGGCCGCAAGCGTGCGCGCGGGGCTGCGGCGGCAGCCTTCGGCCACGGTCGGAGCGAATCATAAATGCCTCTTATGGATTGCGCTGGAAGTAATTGTTGGAAACCCGGCCTGGCCTTTGCCATGATGGCCAGCATGCAGACCAGCGGCGCGTGCGGGGCAGACCGGCCCGGCGACGCCGCACATGCCCCGCTCGGCCCGGCCGGCGCGGCGCAGGAGGAGACACCGAGATGGCTGACAGGTCCGATACCGATCCGGCGCCGAGCCGCGCGCAGCGCAACCGCTCGCACATGCTGGAGCGTATTGAGGAAGTGCGGCGGCTGGAGCGCCGGGCGGAGGAACGCTCGGCCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //