Array 1 6731-5441 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHZ01000003.1 Listeria monocytogenes strain FSL L7-0662 NODE_3_length_520712_cov_92.226548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6730 36 100.0 30 .................................... TATTCAGTGCTTTAGCTTGTTTAAGTTGCC 6664 36 100.0 30 .................................... TAGATGCTGTTCATATTGAAGTATTACCTG 6598 36 100.0 30 .................................... TTTTTTTCGTTTTTGTATTTTGTGATATGA 6532 36 100.0 30 .................................... AAAGTAAAAACAAACTCAACACAAGACAGG 6466 36 100.0 30 .................................... ACGTCTTTACGTACGATAGTGACCTGTTCA 6400 36 100.0 30 .................................... TGAAACAAAGCTACTTGATAAAATTATTCC 6334 36 100.0 30 .................................... ATCCAATTATTTCGGAAAACCTTGCTCCAG 6268 36 100.0 30 .................................... CGTCATGTTCTAACTTCAAGTGCGCTTTCG 6202 36 100.0 30 .................................... GAACGTGGATTATGGAGTTAGCTGAGATGT 6136 36 100.0 30 .................................... TTACCGAAAATGAATTGGTTGCACCTGCTC 6070 36 100.0 30 .................................... CGTCTCAGGCGAATTCATCGACTCCATTCA 6004 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 5938 36 100.0 30 .................................... ACGGCGCTCGCAGACAACTTACAGTCACCG 5872 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5806 36 100.0 30 .................................... ACCTAAGCGGCCGTGTCTAGTTGACGTGTC 5740 36 100.0 30 .................................... GGATGATAAATAATGGCATTAACAGAGGCA 5674 36 100.0 30 .................................... AGGTTTATCCGAACTAGAAGATAAAATTTT 5608 36 100.0 30 .................................... AGTTGGTAAAAAACAAGTTAGTGCGATACT 5542 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 5476 36 94.4 0 .........T................T......... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATGGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GGGCTGGTTATTTTAGGCGGGGGAGCGCTTGTTTTAGAGCTATGTTATTTTGAACACCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGATCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTATTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 292994-293346 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHZ01000004.1 Listeria monocytogenes strain FSL L7-0662 NODE_4_length_304336_cov_84.281428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 292994 29 96.6 36 ..............T.............. CTTGGTAAAGGTTATAACATTGAAACACTTGACTCA 293059 29 100.0 36 ............................. AGATTTTAGCAAAGTCAAAGAGCGTTTTATTGTTCG 293124 29 100.0 35 ............................. ATCAATGACTCTACAGGGGGAAAGGCGTTCAAAGG 293188 29 96.6 36 ..............T.............. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 293253 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCATTGATAGCGCGCCAC 293319 28 75.9 0 A.....A......-..CAT....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 94.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGAGGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCTCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCGAGTTTGGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //