Array 1 212-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALYS01000040.1 Streptococcus mutans B107SM-B contig_339, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
       211	    28	 100.0	    33	............................	GAACAGCCAGCCGGACAAGGTATTAAAAATAAA	
       150	    28	 100.0	    33	............................	TAGAACGTACCCTATTTTCAAATGCTTCAATAA	
        89	    28	  96.4	    33	............T...............	TGACGGCAACGATAGCCCTGAGACTGACAATCG	
        28	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         4	    28	  99.1	    33	ATTTTACCCGCACGAGCGGGGGTGATCC	                                 	       

# Left flank :   GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGATCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT
# Right flank :  C

# Questionable array : NO	 Score: 5.81
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTTACCCGCACGAGCGGGGGTGATCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.90,-9.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 1-149 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALYS01000036.1 Streptococcus mutans B107SM-B contig_335, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
         1	    27	  96.4	    33	-...........................	TGTTTTCCTACCTCTTACCAAGGTTTTTTCTAA	
        61	    28	  96.4	    33	...................A........	TGCCGTTGGGTCAATGCCGTTAGCTTTTAAAGA	
       122	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         3	    28	  97.6	    34	ATTTTACCCGCACGAGCGGGGGTGATCC	                                 	       

# Left flank :   |
# Right flank :  CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTATACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTTAAGTGGATGACAATAAAAGTAAAATGTTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGTGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGCAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAAATGGCA

# Questionable array : NO	 Score: 5.55
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTTACCCGCACGAGCGGGGGTGATCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.70,-9.60] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//