Array 1 4074-243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAH01000045.1 Propionibacterium freudenreichii strain CIRM-BIA 512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 4073 29 93.1 32 NN........................... ACGGGCATGACGGTGGTGCTGGCCCCGGCAGT 4012 29 100.0 32 ............................. CCCACACCGGCCACCGACGGCAATGCCGCGCT 3951 29 96.6 39 ............................G TCGGTCCCGTCTGGTCGAACAGCCTTGGANNNNNNNNNN 3883 29 96.6 32 ............................T ATTAGGCATTATTAATCCTCCTCACCCAGAGA 3822 29 100.0 32 ............................. GGCATCGAGGTGGCCGTCCATCTGGGCAACGA 3761 29 100.0 32 ............................. GAAAGCGGCCACGGCACGCACCCACCGGCGCA 3700 29 96.6 38 ............................G AACGCGCGCGGAGGCGATGGTGGGCAGGGNNNNNNNNN 3633 29 96.6 32 N............................ TGACTCCCGAGGTCCTTGCCGCACTCACCGCA 3572 29 96.6 39 ............................G ATTACTTTAGGCGTGACGGGTATGACGGGTNNNNNNNNN 3504 29 96.6 32 N............................ GCCGTGGTCCCTTCCAGGGCCCCAAAAACAGG 3443 29 100.0 32 ............................. GGCATCGAGGTGGCCGTCCATCTGGGCAACGA 3382 29 96.6 32 ............................T CGTGGCGTTAGGCATCTCGAAAGCCGTCGATT 3321 29 100.0 32 ............................. ATGCCGTCCTTGTTCTTCAATGCCACGACAAT 3260 29 96.6 32 ............................T TCATCGAATCCGCTGCGGCCTTCACCGACGCT 3199 29 96.6 32 ............................G GTGGCTTGCTCGGTCCGGTCGGATGCCGATTG 3138 29 96.6 37 ............................T GCAACTGGCCTGCGGTCGTGTCGGCGGCACGGCGCTG 3072 29 96.6 32 ............................T CCTTCAGCGAACCATTCTTGCTGTTCTCCGTA 3011 29 96.6 39 ............................T TGTACTCAAGATGCTATTAGATTTGGTGANNNNNNNNNN 2943 29 96.6 32 ............................T AAGATGTATGGCGAATCTGATTTGTTTGGTCA 2882 29 96.6 32 ............................T CTTGCACAATGGTGCGACGACGTGAATGGCGA 2821 29 96.6 32 ............................G ACACCACACACCCCACCAGCCCCGCAGAATCG 2760 29 100.0 32 ............................. GGCATCGAGGTGGCCGTCCATCTGGGCAACGA 2699 29 100.0 32 ............................. ACCGAGCTCACCTACCAGAGGATCCTGTAATG 2638 29 96.6 71 ............................G CTTCCGCCGCCCTTGACTCTGCGCCCAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2538 29 89.7 34 NN..........................T GTGATGATCGTCGCCGGAACATCAGGTGCATCTG 2475 29 96.6 32 ............................T GGTGATGTCACCCCCGGGCAGCTCGGAGACCG 2414 29 96.6 32 ............................T CCACGTCGTCGCCCGGAAGATGCGCGAGGAAG 2353 29 100.0 46 ............................. GGGGCCCCGCCGGCGCTCAGATAGGCAACNNNNNNNNNNNNNNNNN 2278 29 93.1 32 NN........................... GATGTCCTACCCCGAGCACCGGTATGAAACAT 2217 29 96.6 32 ............................T GCACGGAATCAATCGACGGCCTTGTCTAATTC 2156 29 96.6 32 ............................G ACCAAGTATAATGCCGCCCACATGCCTATGAG 2095 29 100.0 32 ............................. TGCCATCGGCTTTAGAGTCAGAAACATAATCA 2034 29 100.0 32 ............................. GACTGGGACACCGCCTGGCACGCCGGCGACTG 1973 29 96.6 38 ............................G ACCGCCGCACAGACGGCCATCGGCCTCNNNNNNNNNNN 1906 29 93.1 32 NN........................... GATCCGTCATATTCAGAATATGCTACCGGTTC 1845 29 96.6 39 ............................T GATTAACATCACCCGTAAATGTTGGCTTATNNNNNNNNN 1777 29 93.1 32 N...........................T GAGCCCGATCGCCTACCGCGTCACCGAGTATG 1716 29 100.0 32 ............................. GGCGACCTTATTCTTATCACATGGGACGGATA 1655 29 100.0 32 ............................. TTACATCTGTCACGCGGGTTCCGTACGCCTGA 1594 29 100.0 32 ............................. CAGTGGCGCTGCCCAGCAAGCGGGCCTCGATC 1533 29 100.0 32 ............................. TGCACCGCCCCTGTCGCGATCGCCGGGACCGC 1472 29 100.0 32 ............................. GGTGGCGATCTGTCGATCGACCAGATCTGGAA 1411 29 96.6 33 ............................A TCGGTGATCGCCAGCAGGCGTCCGATGCGCTCA 1349 29 100.0 32 ............................. GAGGAGCGGAACGAAGGTCAGGTGGTTTTGGG 1288 29 100.0 32 ............................. CGTGACCGCTTCGCATCAAACACAACAACTCC 1227 29 100.0 41 ............................. CGGTCCGCGGTCCACTGCGCCAAAGCGTCNNNNNNNNNNNN 1157 29 96.6 32 N............................ TCAAGATCCCCGCCGGCGCGACCACATCAGCC 1096 29 96.6 32 ............................G ACCGCAGCCCAGACCGCTGTCGGACTGATGGG 1035 29 96.6 42 ............................G ACCGCTGGTCGGGGGAGGCATGACTGATNNNNNNNNNNNNNN 964 29 89.7 32 NN..........................T GGTTACGCCGCTCGTGATGTGGCTCAAGACGG 903 29 96.6 32 ............................G GGCGCCCCTGAACTGTCGATGTTCACGATCGA 842 29 96.6 42 ............................G GCAGACGGCTGATGCGGCGCGCCCTGGACNNNNNNNNNNNNN 771 29 89.7 32 NN..........................G GCACCGGACACAAGCTCACCGTCCGATTCATG 710 29 96.6 39 ............................G CTGGAGGCGATCGTCGCACCCTCGGGGGTCNNNNNNNNN 642 29 96.6 32 N............................ TCCCGCACGTAGCCGCCAGCCACAAGGCCGGT 581 29 96.6 32 ............................G CCAAGGTTGCGCAGGCGACCGCGCTCGTCCCC 520 29 96.6 32 ............................G GGTGTCGGGGTCGAGCACATCAGCCACCAGGG 459 29 100.0 32 ............................. CACCAACCCCGCGTCGAAGCCGGCGGCGAATC 398 29 96.6 37 ............................G TTCGGTGCCGACGCTGCCGATGTGCCACNNNNNNNNN 332 29 96.6 32 N............................ GCTTGATTCAGGTGGGCGCGAATGTCGGGGAT 271 29 82.8 0 ........................GGGTT | ========== ====== ====== ====== ============================= ======================================================================= ================== 61 29 96.9 34 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : GCATACGCGGGGGTGATCCGTTCCGCGAATGGGTCTTCCGCCCCGCCGTGCCGTTCTCCCCGCATACGCGGGGGTGATCCCGGCAGCGGCCCTCTGGGCGGACATTGACAGCAGTTCTCCCCGCATACGCGGGGGTGATCCTGTCCGAATGGACCAGGGGCGACTGGGACGCCGGTTCTCCCCGCATACGCGGGGGTGATCCTCCGTTGCACCCATCGACGGAGCAGGCAAGNNNNNNNNNNTCTCCCCGCATACGCGGGGGTGATCCGGATCGCCGCACCCATCGCGAAATTGCAGAACGGTTCTCCCCGCATACGCGGGGGTGATCCTACACCGCGCTGCGGCGTGTGTCTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACCCTGTTTTTTCGGACACCTGATGTGGCATGGCCGGTGGGTCGTGCGGGAAGGTGTTGTCATGGGTGTGGATCCGGAGCAGGTGCCGCGGAGGCGGCGGAAGTTCGCTGCGGAGTACCGCCACGAGGCCGCGAGGCTGGTGCTGACGTCTGGTCGCACGATCGCGGACGTCGCGAAGGAATTGGGACTCGGTGAGCAGTTGCTGGGCAAATGGGGCTCATCCGAATCCAGGGTGTAGTCGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6438-4244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAH01000045.1 Propionibacterium freudenreichii strain CIRM-BIA 512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 6437 29 96.6 32 ............................G ACTTCGGGCCGCTGCGCGAGATGTTCGATCAG 6376 29 96.6 43 ............................T CCTCCCGTCTGGGCGATTGCCTGGCTTCNNNNNNNNNNNNNNN 6304 29 96.6 32 N............................ GTCGAAGGTCGCTGGCGGTGTCCCGCTGCCGG 6243 29 96.6 32 ............................T GAAGGCCCTCCCGAAGGAGGGAGAAGCGAGTA 6182 29 100.0 32 ............................. ACGCTCGCCAAGGCCAACCTCCCGAACGCGGA 6121 29 96.6 32 ............................G AGTCGCGCGCAGACGCGTGTGATCACCGCCCT 6060 29 96.6 32 ............................G GCGGGAACGGTGTGGACACGGACGCCATTAAG 5999 29 96.6 55 ............................T GTCGAGGACGGTGCCGCACACTGAAACCTNNNNNNNNNNNNNNNNNNNNNNNNNN 5915 29 96.6 32 N............................ ATTCCCGTCTGGTCGAGCCGGACAAAGACGTG 5854 29 96.6 39 ............................T GTGTGGCAGGACCGTGAAGCATCGGCGCACNNNNNNNNN 5786 29 93.1 32 N...........................G GTCGCCGCTTCGGGCAAGGCGCAGACCGATGA 5725 29 96.6 32 ............................T TTGTCGGGGTGGGGGGTCCACACGTCACCGAC 5664 29 96.6 32 ............................G GATGCCGTTACAGGCAGGCCCCATGTTAATGC 5603 29 96.6 32 ............................G GGACCCGAGAGCATCCCAGGACCGACCATTCG 5542 29 96.6 32 ............................G TGGATTTTCCGCAAGGCAAAGAGCTTGGTTTC 5481 29 100.0 32 ............................. GTGCCAGGACCATCCCCCGACTTGCCGGCAAT 5420 29 100.0 32 ............................. ACCGTCCGCCAGGGGCGCGCGTTTTCCCACAG 5359 29 100.0 41 ............................. CCATCAAGCACCTCGAGACCGACGTAGCNNNNNNNNNNNNN 5289 29 86.2 32 NNN.........................T GCACCCGCGAGCGGACGAAGCTCGACGAATCG 5228 29 100.0 32 ............................. GTAGAGACCGAGCCAGGAGCAGCCTGGGGCCT 5167 29 100.0 40 ............................. CGGCTGGGGAGTATCAGCGGCCTCCGCTGNNNNNNNNNNN 5098 29 93.1 32 N...........................G GCCAACGCCCGGTCATCGTCCGAGACGCGCCA 5037 29 96.6 32 ............................G GAGCTGCGCCGCACCTTGGACGCCGGCGTGAT 4976 29 100.0 59 ............................. GCGACGCGTCGGGGGACCGAAACCCTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4888 29 89.7 32 NN..........................G ATTGGAAGCAGATTACCCGCCGCCCTTCACAC 4827 29 100.0 32 ............................. GAAGGACACCACCCCGGCCAGGCCACCGACAC 4766 29 100.0 33 ............................. TCTGGATCACTCGTTTAAGGTCAAGGGCCGCGG 4704 29 96.6 32 ............................G TCTGGTTGGCATGTGCACGTGCATGCGCTGAT 4643 29 100.0 32 ............................. CAAACGCCCCGGCCACGCCAGTCGCCGACGAC 4582 29 96.6 32 ............................G TTCCGCGAATGGGTCTTCCGCCCCGCCGTGCC 4521 29 100.0 32 ............................. GGCAGCGGCCCTCTGGGCGGACATTGACAGCA 4460 29 96.6 32 ............................T GTCCGAATGGACCAGGGGCGACTGGGACGCCG 4399 29 96.6 37 ............................T CCGTTGCACCCATCGACGGAGCAGGCAAGNNNNNNNN 4333 29 89.7 32 NN..........................G GATCGCCGCACCCATCGCGAAATTGCAGAACG 4272 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =========================================================== ================== 35 29 96.8 35 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : GGCTCACCGATGACGACTCCGACCATGAGTGGGACATTGTCGAGCTTTGGGATGACAAGGACGGGGTCGTGCCGGGTGGCCGGTCATGGAGTGAACAGCCATGATGGTGTTGGTGCTCACTGCCTGCCCGGCCGGTTTGCGCGGGTTCGTGACGCGGTGGCTGCTGGAGATCAGCCCGGGAGTTTTTGTGGGCAAAGTCTCTGCGCGGGTGCGTGAAGCCATTTGGGCGCGGGTTGAGGACCTCTGCCAGGACGGACGAGCAATTCTGGTGCACACGGCGCGGAACGAGCAGGGCTTTGACTTCAAAGTACATAGGCACGATTGGGAAGTTGTTGATCTGGAGGGCCTCAAACTGATGCGTCGCCCCAGAACCCCGGATCGTGCGTCCAGTGGCATGCGCTCCGGATGGAGCAACGCTGCCAAGCGACGACGGTGGGGTCGCTGACTCGGAACGTCCTCGTATCGGCCTTGAGCGCCAGTAACATGCGTAGTCAGGAAGT # Right flank : ACACCGCGCTGCGGCGTGTGTCTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCCCGCATACGCGGGGGTGATCCCACGGGCATGACGGTGGTGCTGGCCCCGGCAGTGTTCTCCCCGCATACGCGGGGGTGATCCCCCCACACCGGCCACCGACGGCAATGCCGCGCTGTTCTCCCCGCATACGCGGGGGTGATCCGTCGGTCCCGTCTGGTCGAACAGCCTTGGANNNNNNNNNNGTTCTCCCCGCATACGCGGGGGTGATCCTATTAGGCATTATTAATCCTCCTCACCCAGAGAGTTCTCCCCGCATACGCGGGGGTGATCCCGGCATCGAGGTGGCCGTCCATCTGGGCAACGAGTTCTCCCCGCATACGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38759-39734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAH01000045.1 Propionibacterium freudenreichii strain CIRM-BIA 512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 38759 34 100.0 42 .................................. GCTTCGCGGAGATGATCGTCATGACGCGGGCGCCGCCAGGAA 38835 34 100.0 41 .................................. GCTAGAGGGGGGTCAAACGGCCCCGAGTCGGCATCCTGAGC 38910 34 82.4 40 ............................NNNNNN NNNNCGGGAAGTCTTGCCCCACCCCTGGGGAAGCCTGGGG 38984 34 100.0 39 .................................. GCGCGAATTGTCCCTCACGTGCTTTCATCCACGCCACAA 39057 34 100.0 36 .................................. GCCATACATCTTAGCCATAGCGGCTACAGACATCGG 39127 34 79.4 36 ...........................NNNNNNN NNNGATCAATCAAATGCCACGACGACAATGGCGAAC 39197 34 100.0 37 .................................. GCGGCTCCGGTGGCATTGCGCAGAATCCTCCGCTGTG 39268 34 79.4 33 ...........................NNNNNNN NNNCACCGCATAGATTCCGGTTTCAGGCACAAT 39335 34 100.0 38 .................................. GCATAGGGTGGCGGACCCTCCACCCTCTTGCAGCGGCT 39407 34 85.3 42 .............................NNNNN NNNNNACGCGGGTTGCACCTGCTGGGGCTCCCGGTGGAGACG 39483 34 100.0 39 .................................. GCCATGGCGTGAGGGGACGAAGCGGATCCGGTCACGGTG 39556 34 100.0 38 .................................. GCTCGGCCAGAGCCGCCGCCCAGCTGGCCGCCGACCAG 39628 34 85.3 39 .............................NNNNN NNNNNGGTCCAGACGGCACCGACGGGCTCCACGAGCAGG 39701 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 14 34 93.7 39 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAG # Left flank : CCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCANNNNNNNNNNNNNNNNNNNGGTACGGCGCGAACGCCCGAAGTGGCGAGGCGGTG # Right flank : GGCTCCAAGCCGGCGGCGAGCCATGGTTCGTGCTAACTGATATTGCCCCTCCTTCTGGTGGGCCTACCCTGGTTTTTCGGACACCTGATGTGGCGGGGCCTGGTGGCCCGAGAGTGTGGCGGATGCTGGTCCGTAGTCGAACCAGGATCCGCCACCACCTCAGCGGGACCACATCTGACCGGGCTCCAGGGGCCCCGACCGGGCCCGGAGTCGCTACTTCAGCTCTGCCGCCCGTTGCGAGGCGGTGGAGGCCGAGTCGGTGGGGATGCCGGGAGTCGTGGGGCGTGCGGAGCAGTTCACCTGCGCCCCGGGGTTCGTGATCGCTCTCGTGCAGATCTGCGAGGGCGTACCGGGCGGTCCGTGGCCGGATGTGGGAGTGATCGTTTCAGTAGCGGGCCCGGCTGCTGGGGTCGTGAACCGCAGGGAGCCGGGACGGTTGCCGAACTGGACACCGATTCGGTGGGCATGCCCATGGTGTCGATGGCTACCGCTCTTTTGGA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 41572-42043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAH01000045.1 Propionibacterium freudenreichii strain CIRM-BIA 512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 41572 29 100.0 44 ............................. TTGAGGCCTTCACCACCCGCGACGAGGCCATCACCGCTGAGCTC 41645 29 100.0 54 ............................. NNNNNNNNNNNNNNNNNNNNNTTGCACTCCACGACGAGCCTCCCCCGCATATGA 41728 29 100.0 42 ............................. TTGAGGCTTGGGGTGAGGTGGGTGGCCAGATCCTTGCCGGGA 41799 29 96.6 41 ............................N NNNNNNNNNGCCGCGATTGCGTTGAGCTCGCTGACGAACGT 41869 29 100.0 42 ............................. TTGAGGCGCGTTCGCGAAGGCGATCGTCTCCAGCAGCCCTTG 41940 29 100.0 46 ............................. TTGAGGCGCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 42015 29 96.6 0 ......................A...... | ========== ====== ====== ====== ============================= ====================================================== ================== 7 29 99.0 45 ATTGCCCCTCCTTCTGGAGGGGCCCTTCA # Left flank : GTGCTGAAGCGCCGCGGCGGCTCGGTTCGTCAGGGTCTGGGGATCACTCTTCTTCTCCCAGAACTCGTTCAGCGACTTCCATACTCGAGCGTCATACTTATCCATCGGCTGGCCGCCTGCGTCGATGTCGTGTACGGGATTGGGCATGGGTGAGGATCCCTTCGGTCGGACTTCTCTGAACATCATGCACTGTCTGGCCGACAGATCGAGTTGGGGTATGTCGTTGGGGTATGTCGAGTGCCCTGAACTCGTCCGAGGCTCAGAAGCCCTGGTGATCGGTGTCAGTGCGCCAGGTAACGGGGAAGCCGGCGCCGGTCTCATGGGATCCCGCCTTCTCGAGTTCCGAGTTGCCGGCATCCTTCCCACCCGCGACGAGTCCGAGCAACTGGGCAGGGCCACCAGGCCCCGCCACATCAGGTGTCCGAAAAACCAGGGTAGGCCCACTGGAGGGGCCCTTCATTGAGGCTTATGGATGATGACGTCAGCAATGATGAGCAAGA # Right flank : ATTGAGGCTCGTCGTGGGCGCCGGGCACGTCCATCTATCTGGCAAAATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNNNGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGGGTGATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNATGATGCCAGCGCCGATTATCGTGAGCGTATTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAAGATGAGCGGGCCGAGGGGTTCGACCCGGGACGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAGATTGCTCCTCCTTCTGGAGGGGCCCTTCATTGAGGCNNNNNNNNNNCCTGTGGGGCTTCCCGGTTGTCGTCACGACCGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //