Array 1 103892-104896 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKW01000009.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal609 sal609_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103892 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 103953 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 104014 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 104075 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 104136 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 104197 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 104258 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 104320 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 104381 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 104442 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 104503 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 104564 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 104625 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 104686 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 104747 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 104808 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 104869 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121461-122832 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKW01000009.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal609 sal609_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121461 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 121522 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 121583 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 121644 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 121705 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 121766 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 121827 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 121888 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 121949 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 122010 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 122071 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 122132 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 122193 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 122254 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 122315 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 122376 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 122437 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 122498 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 122559 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 122620 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 122681 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 122742 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 122803 29 100.0 0 ............................. | A [122830] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //