Array 1 345-1272 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNM01000384.1 Pseudomonas aeruginosa strain PA09 NODE_384_length_2526_cov_4.461859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 345 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 405 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 465 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 525 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 585 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 645 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 705 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 765 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 825 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 885 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 945 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1005 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 1065 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 1125 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 1185 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1245 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1730-81 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNM01000397.1 Pseudomonas aeruginosa strain PA09 NODE_397_length_2071_cov_6.293724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1729 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1669 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1609 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1549 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1489 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1429 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1369 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1309 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1249 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1189 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1129 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1069 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1009 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 949 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 889 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 829 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 769 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 709 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 648 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 588 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 528 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 468 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 408 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 348 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 288 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 228 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 168 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26657-28061 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNM01000040.1 Pseudomonas aeruginosa strain PA09 NODE_40_length_36657_cov_3.807857, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26657 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 26717 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 26777 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 26837 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 26897 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 26957 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 27017 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 27077 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 27137 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 27198 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 27258 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 27318 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 27378 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 27438 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 27498 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 27558 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 27614 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 27674 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 27734 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27794 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 27854 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 27914 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 27974 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 28034 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //