Array 1 2951982-2954634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088237.1 Ralstonia solanacearum strain UW251 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2951982 29 96.6 33 ............................T GACGCATAGAAATTTCAGCGCCACCCGCAGATC 2952044 29 100.0 32 ............................. AAACCATCTGGGTTTTCTGTGGGTTGCCAGAA 2952105 29 100.0 32 ............................. TGAGAATCAAAGCTCACATGCTGTAAAATTTA 2952166 29 100.0 32 ............................. GCCGAAGTCCGCCGCACACTTTTGAAAGATCC 2952227 29 100.0 32 ............................. CCCAATTGACAGAGTTTCCGGCCATTACCGTA 2952288 29 100.0 32 ............................. GGGGTGTCTGGAAACCCTGGCGGACGGCCAAA 2952349 29 100.0 32 ............................. CCCGACAGGCCGATGGTCATGGATGCAGCGTT 2952410 29 100.0 32 ............................. AATATCCGCATGCCGTGAACGGTGCAGCCACA 2952471 29 100.0 32 ............................. CGCGCCGATGTCCTTCAGCGCCAGCGTGAGCA 2952532 29 100.0 32 ............................. CAGCTTTTCGGCGGCTTCCGGGTTCTGGCCGA 2952593 29 100.0 32 ............................. ATAGAGAGCCGGGGGAGCGTTCCGCTGGAGCG 2952654 29 100.0 32 ............................. AAGCTGGTGCAACAAGAGCGATTCGATGAAGC 2952715 29 100.0 32 ............................. CCGCTCACTTGATGAGCAGGTTTACTCTGCAA 2952776 29 100.0 32 ............................. CGAATCCCTCCGGTGTCGTATAAGCCGACACG 2952837 29 100.0 32 ............................. CCTCGATTAGCTGCGGAGGATATGACGCCCGT 2952898 29 100.0 32 ............................. CCCGCTCACCCTGGACGACTGCGCCGCCGTGA 2952959 29 100.0 32 ............................. TGTTCGTCCTTGAACGATTCCCAGCAGAGCTG 2953020 29 100.0 32 ............................. CTTCTTCGCCGCCGATGAACTCTTCGATCTGC 2953081 29 100.0 32 ............................. GCGAATAGCTTTGCTATTCTCAAGACAAGCCG 2953142 29 100.0 32 ............................. GCATGAGCCTGGGCCTGCTTGGCACCCTTGGA 2953203 29 100.0 32 ............................. CTGGCAGATTTCGGCTTCCGGATGACGCAGAC 2953264 29 100.0 32 ............................. CGCGGCTATGACCCGCGAAGCCTGCGCCGCAT 2953325 29 100.0 33 ............................. TTGGCGAGATCGCACTTCAGATAGTGCGCCGGC 2953387 29 100.0 32 ............................. CGCTCCAGGCTATACGGGCCTTTTGCCCATAC 2953448 29 100.0 32 ............................. ATCACGGATCTGAATCTGTACCTGGACGATCA 2953509 29 100.0 32 ............................. CCCGGTATGCATTGCAGGGCGGGCCTTTGGCG 2953570 29 96.6 32 .......T..................... CTTGTGCTGTTCGGTCAATGGACTGCTTTTCC 2953631 29 100.0 32 ............................. ATTCGAAGGTCGCCAGTTCTCGCATCACCGTG 2953692 29 100.0 32 ............................. TTCGGGCATATCCTCGATATAGCGGCGGATCA 2953753 29 96.6 32 ............................C GCAGAGGATCGATTGCCTTTACTGCGGTAATA 2953814 29 100.0 32 ............................. AGCGGGTGCGTATAGTTGGCCTTGCTGCGGCC 2953875 29 100.0 32 ............................. GGATATTCCATCGGCTACGGGCACCTGATGCG 2953936 29 100.0 32 ............................. CGCGTTCATGCAAGTGGGAACCATTGGTCCGT 2953997 29 100.0 32 ............................. GAGGCGAGCCAATCCAGAGCGCACATCAGATG 2954058 29 100.0 32 ............................. CGAGCCGGCACGACGTTCATGAACGTCATTTG 2954119 29 100.0 32 ............................. GAGAGGGCGGCCGCGCCAGTCGCAATCCCGGC 2954180 29 100.0 32 ............................. ATTCTCGAAGCGTTCAAGGCAGACGAGGATCA 2954241 29 96.6 32 ............................T ACGTCCGGAAGAACGGCGCCTGGGTCCTGGCC 2954302 29 100.0 32 ............................. TTAGATTCCAGGCCGTCAATGCCAACACGGGC 2954363 29 100.0 32 ............................. ATGGTGCTAATCGAGCCCGCCGAGGACATCGC 2954424 29 100.0 32 ............................. ATCAGACCGACATCATCTTCGACGACTACGAC 2954485 29 100.0 32 ............................. AACAGGTGCGTGTGGTTGGGGTGGTATGGCAA 2954546 29 100.0 32 ............................. CAACAGCTAGACGGCGCCAGCGGCACCGTTAC 2954607 28 89.7 0 .A........-A................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.5 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTACGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCTGCATCAACAACTCACCGTTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGCTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCAACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTACCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCATTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2964075-2967032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088237.1 Ralstonia solanacearum strain UW251 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2964075 29 100.0 32 ............................. TCACGTTTGCCTCGATGCCATCCTCGCCTACG 2964136 29 96.6 33 ............................A GCGCAGGTAGGATTTCTCGCAGGATAATTGGCG 2964198 29 100.0 32 ............................. CGATCTATACGCACGCATGCCTGATCCTGAGC 2964259 29 100.0 32 ............................. CCATTTCTCGTAGGTTGTCTCGACTGGCTCAA 2964320 29 100.0 32 ............................. ATTGATTTCGACGGCCTGGCGCTTGCATCGAG 2964381 29 100.0 32 ............................. TTTTTTTCGCCGGCAGTAGTTGGCACTTCTGT 2964442 29 100.0 32 ............................. TACGCGCACGATGGCTCGTTCGAACAGGAAAT 2964503 29 100.0 32 ............................. CAACTGGATTGGGCCACCGCTCATCCCCCACC 2964564 29 100.0 32 ............................. GCTCGGAGATATGGATCACGTTCAACCCGTCG 2964625 29 100.0 32 ............................. CCCTTGCCAGCATTGGCAGCGAATGATTCCAG 2964686 29 100.0 32 ............................. GCGGTGCAGCAAACCGAAGTGACCGGCAAGGA 2964747 29 100.0 32 ............................. CTGACCGGGGGCGACGAATCCATGCTGACCGG 2964808 29 100.0 32 ............................. AATGCCGATATAGCCCGCCATTTTTTACCCCT 2964869 29 100.0 32 ............................. CCGTACCACATCGAGGAGGCGGCATGCATGAC 2964930 29 100.0 32 ............................. TCGAGCGGATCCTTGTCTTTCTTGCGTATGTT 2964991 29 100.0 32 ............................. GGCGCCTAGAAGACCGCCCACGAAGGATACGT 2965052 29 100.0 32 ............................. ACGTATTCGACCTGCCGGCGCAGATTGCTGAT 2965113 29 100.0 32 ............................. GCGGAGCGGCAGATTGGGCGGCGTGATGCGCG 2965174 29 100.0 32 ............................. CAACTCGACGATTGCCACGTCGCCCGGGCCAT 2965235 29 100.0 32 ............................. CGGACGCTAGGAGCTCTACTCGTCTTTTCAAC 2965296 29 100.0 32 ............................. CTGGTCGAGAGCCGCAAGAAGCAGATCAAGGA 2965357 29 100.0 32 ............................. CCGAACTGCGCCTCCTGCAAACCGAAGCCGAG 2965418 29 100.0 32 ............................. CGTGTCGGCAGCATAGTCCAGGTCGATCTTGT 2965479 29 100.0 32 ............................. TCAGCGTGGAGCCGTCGCCGCCGGTCAGCGTG 2965540 29 100.0 32 ............................. TCGTACAATTCCAGACTAGGCAGGTCACCCAG 2965601 29 100.0 32 ............................. GACAATAGCGACATAGACCGAGCAATACAGAT 2965662 29 100.0 32 ............................. GCGATCCCGACTGGGTTTCGCGACCTTGACGA 2965723 29 100.0 32 ............................. ACATATCTGCCGCAGTGGCCCAACGAAGACAG 2965784 29 96.6 32 ............................T ACGGCATCACAGCTCGATACAACGTCATCAAG 2965845 29 100.0 32 ............................. CCGGATGCATCTGGGTGGAGTGCGTGAGCGAG 2965906 29 100.0 32 ............................. CGATACGAGGCGACGCGCGGCGGCCTGTTCCA 2965967 29 100.0 32 ............................. GCCAGACCCCACATCGCGAGAATTCCAGCCCC 2966028 29 100.0 32 ............................. TGCGGCACTAATCTGTTGAGTGCTAGTCCCGC 2966089 29 100.0 32 ............................. CGCGCGAAGCGTTCTGGTAGGCGGTCGTGAAC 2966150 29 100.0 32 ............................. TCAGGCGTGACCGTTGAGCAAGCCCGAGAGGT 2966211 29 100.0 32 ............................. TCCTGCCCCTTGTCGCTGGCCTGCATCTTCAC 2966272 29 100.0 32 ............................. ATGCGCCATATTGGTCAATGCGGCCGAATGCA 2966333 29 100.0 32 ............................. AGGCTTGGGCGAAACTTGCTGTCCTGTTGGAT 2966394 29 100.0 32 ............................. CACTGCTCAAAGTTCGATGCGCGGAAAAGCGT 2966455 29 100.0 32 ............................. TCGCCGCGCCCGACCAGCACCTGCCCGATGAT 2966516 29 100.0 32 ............................. GCCGCCGACCAGGCGGGCCGCGCCAGCGCGCT 2966577 29 100.0 31 ............................. CTACTCGCCTTCCCAGGCTTCGCGTTGTGCA 2966637 29 96.6 32 ..........T.................. TCGGGCAACAAGATCTTCAGCCGCACCAATCC 2966698 29 100.0 32 ............................. ACCAAGCAGGAGGCGGCATGAGCAAGCCGGAC 2966759 29 100.0 32 ............................. CAGACAGCGCGCCCTTTCTCAGTCGCGCGGCA 2966820 29 100.0 32 ............................. GAGACGACCGGCAGGCCATCATCACGGCTCTC 2966881 29 100.0 32 ............................. ATGAGTGGGTTACCCGTCGCGGCGGCTTTTAT 2966942 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 2967003 29 86.2 0 ...........A.A..........CG... | C [2967008] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCTATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGTCGATGTCACGACCCGGATGCCGCTACACGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGGCGCAGCGCGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //