Array 1 14944-14610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPPD010000003.1 Lentilactobacillus sp. IMAU92037 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14943 29 100.0 32 ............................. TAATGACTGAAACTAAAACTGACAAAGTCGCA 14882 29 96.6 32 ............................T CAGAACAGTTTGTGAGACGATCAAGTCAGCAT 14821 29 96.6 32 ..................T.......... GGGTATGGTCCAGAAAGCTACTATGATTTAGT 14760 29 93.1 32 .............A.........A..... TATGAATTCGTTTTGGCACACTTACTTCAGAT 14699 29 96.6 32 .............A............... GACGGCACCGCTCTTTGTCGGTGCTACAACGA 14638 29 72.4 0 ..........T..A......TT.A..AAT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.5 32 GTATTCCCCACGTGTGTGGGGGTGATCCC # Left flank : ATGAAGGACAAAATTATCTCGATTGGTGCGATTAAAAGAACTAAGAATGGTGAATATGACCAATTCGATCAATTGATTCAGATTGATTGTGAAGTTCCGAAGAAAATAACAGAATTGACTAATATTTCTTCAGAACTATTAGCAACCGATGGAATCGATTTAAGCTTGGCTTTGCAAAAGCTCAAGGATTTCGTTGGCAGTTCAACCGTCATCGGATATAATTTGCGGTTTGACCAGGAGTTTCTTTCGGAAGCCTTTCATCAAACTAATCAATCTGATTTAACTAATGAGATGCTGGATATAATGCCGATGGTAAAAAAATCAAATCAGTTTCTTGATAATTATCGATTGAATACCGTTTTAAAAGCGTATCAAATTGATAATTCAACGCCGCATCATGCATTGGCAGATGCAAAGGCAACATTGAACCTAGCAATCAAACTCATTGAAAAAGGCCATTTGTAAATTTGAGAATGCCGTTATAGCAGGGATCCTTTAGT # Right flank : GGATATCCAATAAGGTAGTACAGAGTAACAAATGTCAAAGAAGAATTGAGTTTCAGCAAAACTCATGAAGTGAGTTGAAAGCAATATTCTTAAGGTATAACATAACGTTAACAATTATTTTTTGGAGGCATTTTTATGACGACCATTGGTTTTTGCTCACCGTCGACACCTATTACTGCAATCTCACCGATTCGTTTTAAACGAGCGCAGAAATTTTTGACCAGTAAAGGGATCCAGTTGATTGCCGGCAATTTAACGGCTAAAAGAGATGCTTATCGGTCTGGTTCAATTCGGCAAAGAGCCGACGAGGTTAACGAATTAATTCGTAACAATCGTGTGGATATCATTATGACAACGATTGGGGGAACCAACACCAATTCAATTTTGCCTTACGTAGACTATGATTATCTAAATGATCATCCCAAGACGTTCGTTGGTTATTCCGATGCGACAGCATTGTTACTCGCAATTCAAACCCATGCCCCCAATTGTCGGGTACT # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24971-24638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPPD010000003.1 Lentilactobacillus sp. IMAU92037 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24970 29 100.0 32 ............................. GAGACAGGAGATGGTCAAATGCATGACCCAAA 24909 29 100.0 32 ............................. GAGATATTCAGATTTTAAGCGGTCAGTCGAAA 24848 29 96.6 32 ............................C AAACAAGGTATTGAATACCGCTTGCAAAACCC 24787 29 100.0 32 ............................. GCGCCAGCAAGCAAACAGCCAAATAGTCGACA 24726 29 86.2 32 ...........A.....A...A....T.. AGGCTTCGATGGGCATTAAGTCCTTCATAATT 24665 28 72.4 0 .....TT..-.A.G....C.....C..A. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.5 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : TATATTGCGTGGAAACGTGTTGAGGCAATATACGCGCATCAAATAAAACCGATGGATTGCGAGGAATTTATATGAACAAAATTTCTATTCGTGGCAGTTTGCAGACGAAACAAATCGTAGGTAGTTATTCAGATGTTGAGAAGAAGATTATTGCGGATTTAGACTCCGTTCAAGAAAAGGATGGCAAAAAGCCATTTTCAAAGATTGCTGATGAAGTGGTTGTTGAGCCATACCGGGACGGGGCGTATGCGTACCACGCATTATTAACGGAGGCGGCAAAGATGTACGATTTGTCGCCAGAGATTCAAAAGAGTGCCAATGTTAGTGATGAATAGTTTGATTTGGGTCATGGTGAAGACTTCCTGTTAGCTTTTTGTTGATAGGAAGAAGTTGCCATGGCCTATTTTTATGTCGTTAAGTTGTAAGGGTGTTGATCATAAAGTGATTGGAAACAGACATTTGCCGAATTGAAAATGCCGATTTAATAGGGATCGTTTAGT # Right flank : TAGTATATGGGACATGATTCAGTATTATTGAATTTGGATAATTATTTGTTAGTAAGTAATAAATTATATCGTAGTTTTCTTAACAAGGATTTAGATTATAATTGATTTAGTTGAAGCTTAGGGGTAGATGAACTCAAACGAAGGGAAACTAAAACAATGAAATTGCATAAAAATGTAACCGCTTTATGGGCCAAGAAAAATTTCGAACATGATGAGCAACTTTGGCTGCCTTTGGTGATCCATCTGACGGATGCGAAGAATACCATTAACTGGTTGTACAATCATTGGCTCAGTGACAGCTAAAGGCAGTTATTGAAATATACGTCGCCTGATGAGACTGATGAAAGATCTGATGAGGATGTGCAAAAACTAGTCAAGTTTCTTGGATTTACCCACGACATTGGCAAGGCAACTCCTGCATTTCAAAAGAAGCGTTCTTATATCCGTGACGATTATTTAGATGATCAACTGGTGGAGAAATTAATCAGAAGCGGTTTTTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34576-35096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPPD010000009.1 Lentilactobacillus sp. IMAU92037 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 34576 29 93.1 33 ...........A................C TTTGGATTAGCTTCTTATCGTTTGGCCAGTTGA 34638 29 96.6 32 ...........A................. ATTACTCATCAGATCTACATCATGAGTGCCCC 34699 29 93.1 33 ...........A................C GAGCCATTGATGATGAACCAAGTGCGGATGTTA 34761 29 100.0 32 ............................. AATACCATAGTTGCGATTAAAGAAAATATTTC 34822 29 100.0 32 ............................. GACTTGTTCCAAAGTCATGTTTTTAACGGTAA 34883 29 96.6 32 ............................C AAAGTTTGGTACTACATCGATAGTGATTGGGG 34944 29 100.0 32 ............................. AACCACCTTCAATGATGTTAGCCCCGGCAAAT 35005 29 96.6 34 ...............A............. CACCCCAGAAGCTGACTATGAGTTAGCCCCCCCA 35068 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.3 33 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : ACAAGAAACTTCCAATCATCAAAAGATTATTGTTTGGAGTTGCTACTAAAACCGAAGTGAGTTAACCCGGTCCGTGAGCCGAAACTCGAAATCTATTTTGAAAGAAGGGATGCCCGTGAATCAATAAGCCGATTGGCAACGATACACCCAAATATAATAATTCACCCCTCAAATAATTACTAAGAAACCCCAACGATTTCTTAACTTCATGAATTACCCCTCAATATGAAAAAATCCCTTAAGTCCCTGCGTGTTAGCAGGGGCTTTTTTGTGCTTTTGTAAAATGATTAGGGATTTGAGATGGGGTCTTTGTGAGTGGTCCACTATTTACCATTTCAACAACCCAATTTTCGTAGCATCAGCAAATATTTTTTGTTATTCTTAAGGTGGCCAATTGGTTAGGAGTATGGATTGGTGTAGGAAGGAACTTTCGAGTCCAAACTAATGAAAAACAGCTGGATTGGAATTTTCAAATGCCGAGATGACAGGCTTTCTTTAGT # Right flank : TTTATAACCGCCACAAGACCTACTTTAAGCAATTGCATCAATCACGTGAGGATATTAATCATACTTATTACAAATATTAATCACCAGAGACTGGGAATAGGCATTTTGATTCCGGCCTTTTTCTTTCTTCAATTCGGTTTATGAAGGTAAAACAAAAGCCGCTGATTTAAGCGGCGGAAATGGGTTTGAATTGACAGTTATTGCGGAGGCTGACAGTTCATATTTAAAAAACACCTTATAGCTAGACAACTTTTCCTACTTACCCAGTTCAAACAACTGGGCCATCATGCCCGAGCCATCCGCGTGGAAACTAAATGCTGGCTCGCTGTAAGTTGCCCATTTGTTTAATTCAGTGTCTCGATGTTCCTGATCACAAGTCAACAATTCGTTGCTGGCAGTTTTGGCGGTCTTCTTGTATGAAACGAGGCCGTTGGTGTTGTAGACCAGCATTGCTCCTAGGCCGGTATTGGTTGTAGCAATTCCTGTCGACAAAAAGTAAG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACATATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //