Array 1 2630379-2628231 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020774.1 Listeria monocytogenes strain H34 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2630378 36 100.0 30 .................................... GAGCGCTGATTGATCCGCCAAGTTTAGGCC 2630312 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 2630246 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 2630180 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 2630114 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 2630048 36 100.0 30 .................................... GGCAGATGAACTGTATATTAAATTTGGGGA 2629982 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 2629916 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 2629850 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 2629784 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 2629718 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 2629652 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 2629586 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 2629520 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 2629454 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 2629388 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 2629322 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 2629256 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 2629190 36 100.0 30 .................................... CTTAGTTTATCAGTTTATCACAATGGAAGA 2629124 36 100.0 30 .................................... CGGGTCTTTTTTGACCACTTCGGAGAACAT 2629058 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTGTTACTTG 2628992 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 2628926 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 2628860 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 2628794 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 2628728 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 2628662 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 2628596 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 2628530 36 100.0 30 .................................... CAGTACTTGAGTCAGCCACCTTCCATATAA 2628464 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 2628398 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 2628332 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 2628266 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //