Array 1 176697-175473 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHZQN010000002.1 Streptococcus gordonii strain 10558 Sgordonii_10558_DanaHsu_Sia_NO_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    176696	    36	 100.0	    30	....................................	CAGAAAAGAAACCAACAATGAAAACTTCAA	
    176630	    36	 100.0	    30	....................................	TGCATGTCTTGAGCGTATAGTCGTCTTTGT	
    176564	    36	 100.0	    30	....................................	ACATCGTCACCAGCAAGCACAATAGCTTTT	
    176498	    36	 100.0	    30	....................................	TAACAACGAGTGTATATTCTGCAAGCGAGC	
    176432	    36	 100.0	    30	....................................	GAACAGCATCCCAGAATTTCTTAATCTTAT	
    176366	    36	 100.0	    30	....................................	TCGTTTTGAAAATGACTTCTACAAGTTACC	
    176300	    36	 100.0	    30	....................................	TTCTCTGGCGACTGGTTTAACAAGGCTAAA	
    176234	    36	 100.0	    30	....................................	ATAGCCTCAAGTCCGAACTTGCCTTGATAG	
    176168	    36	 100.0	    30	....................................	AACTTAAGTTTTAACTTACGGTCACGAACT	
    176102	    36	 100.0	    30	....................................	AAACATATCAACTGCTTCATTGGACATTAC	
    176036	    36	 100.0	    30	....................................	ATCCAACAGATCGGCATAGTGGATACTATC	
    175970	    36	 100.0	    30	....................................	TTTTGCGTTTTTATTATTACGCTCAAAGCG	
    175904	    36	 100.0	    30	....................................	TCTAGGAAAAAAGTGAACAGCGAAGGTCTT	
    175838	    36	 100.0	    30	....................................	TATAACAAGTACTAACTTAATAATAATCTA	
    175772	    36	 100.0	    30	....................................	TTTCCATATGCTCCAATTGTGACAGTGTAA	
    175706	    36	 100.0	    30	....................................	CTTCCTCATCTTTACCAACAATAAGGATAT	
    175640	    36	 100.0	    30	....................................	TGTATCAAGTCAATTGACGATGATAGCAAC	
    175574	    36	 100.0	    30	....................................	TATAACCCAGAAAACTATTGAAATCAAGGT	
    175508	    36	  97.2	     0	...................................T	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  99.9	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTAATCAATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTATCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTATCAGAGGATGAGTTAATAAATCTGATAGAGTATATCCAACTCAATCAACTGAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTCCCGCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAAGAATTGGAACTTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  AATATTAAGATTTAATTCAATTCAACCATATTAGCTAGAGGTTGGTGGGGAGTTCAAATGAGAAAGCAGATAGAAAAGTTATTAAACAGCGATATAAGCACAAGCGCAATCGCTAAAGGAGCAGGTGTTCCTTGGTCTACAGTAGCGGACCTTAGAAAAGGGAAAACCAGTATCGATAAAATGGCCCTGCTTACAGCCGAGAAATTAAATGATTTTGCGGAAGAATTAGAAGCGGAAAAGGACGATGAGTTTTACAATTAATCTATCCAAAAACAACCACCTATTTAGGTGGTTTTTTCAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTACGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//