Array 1 345424-346236 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036491.1 Bacteroides sp. A1C1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 345424 47 100.0 30 ............................................... AGTTCGGTAAGATGGATAAGGGCGCGGATA 345501 47 100.0 30 ............................................... TTTGCACGTGTTACAGCAAAACAAATTATA 345578 47 100.0 30 ............................................... TCGTGCTCTATAGCCTTGACCCCCCATCTG 345655 47 100.0 30 ............................................... GTAGAGGACGGTGTGTTGGTTATCACCATT 345732 47 100.0 30 ............................................... ATCGAGGAACAAGGGATTTGAAGTGCATCG 345809 47 100.0 29 ............................................... GGCATACGGAGAATATAACCGAGCATGTT 345885 47 100.0 29 ............................................... GCATATACAGTCATCGAAGCCGTTACTCC 345961 47 100.0 30 ............................................... TATTGGAAAGAGATTGAGGAAGATTAACGC 346038 47 100.0 29 ............................................... GGCGCTGTAAACGCAGCAGATAGTAACTG 346114 47 100.0 29 ............................................... AACTGTGCGAGGATTCTGACAACGAGTCA 346190 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 100.0 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCTTACTTGTCGGATTCTTTCAGTCGGCTAATGCTGACAGGGCCGAATATCTCGTCGGGCGTAGAGAAGCGGGACATCAGGTATTCAAAGGCACGGGCATCTGTAAAAGCCGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGTCCCAGGAGCAGAATGCTCTCGCCTGCCAGAGCTGCCAGCAGGGAGAGGTTTATTTCAGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGACGAATGCGTTGGGTTATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGTGTGTAAAGATACAAAATAGTAGGGAAATCAGAGAGAGTCTTATTAAGATTTAGTATCTTTGAACCATTGGAAACAGCGTCTTCTGTTTGGGCGATAGGTTCGTACCA # Right flank : CTGATTACAAGTAACAATCTAATATTCAAACGATTACACATAGTATTAGAATATAAAAAAAGAATGCTGCTTCTAAAAAAATCCCGCCATTGCGCGGGATTTTTTTAGAATAATTCTAATTGTTGTCCAGGCATATTCACATCCACAGTCTTTTTCCCATAAAAAAGTGCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCGACACTTCCATAGTCCGGTAAGAAAGATTTAACTCTTTTTATATGTACCTCCGCATTCTCACAACTCGCACAATGACGAACATATATAGAGAACTGGAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAATTCCGCATACGCCTTTTTATCCTTCTTGGTTTCGGTAGGCAAATCAAACAACACTAATACCCACATAATGCGATATTCACTAAACCGGTCCATCACATCTCTGGATAGGATATTTTACGCAACTCACCACTGAAACATTTATACAGAGAAGCCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2935909-2936735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036491.1 Bacteroides sp. A1C1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2935909 33 97.0 33 ................................T TATTGTGGCTCATGTGATGGGTAACTTTACCGT 2935975 33 97.0 32 ................................C AAACAGACTTTCAAGAACGGACAGCCCGTGGG 2936040 33 100.0 34 ................................. AAAAGCGCATACGACGATATTATGAAGGCAAAGA 2936107 33 100.0 33 ................................. CTAATAGAGAAACTGAAAGGAGATTGAATAATG 2936173 33 97.0 35 ................................T TGAGGGGGCTGTTTTCGGCAGACGGACATACTTCG 2936241 33 100.0 32 ................................. CAGATGGCAACAGGTTATGACGGTGCCGCCGC 2936306 33 97.0 32 ................................C TCTTAAAACTGTTTCATCTCCAAAAACATATT 2936371 33 100.0 35 ................................. CTTTTAGTAAATGTAAGTGGGTAAAGGAAAAGATT 2936439 33 97.0 34 ................................T CTGTAAACCACTTTATTACTCTCGTCAAACAATT 2936506 33 100.0 33 ................................. AGCTTAGGGAATACGGAAGGAAGTCCGTGAGCT 2936572 33 100.0 31 ................................. AGCTGGAAGTCGGCGACAAGCTGACCGCGGA 2936636 33 97.0 34 ................................T TCCGTAATGATATATCCGTAGCTCTTTCCACCGT 2936703 33 97.0 0 ........................G........ | ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.4 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : TGATGATTATCCGGTATTTCTAATAAAATGAATGCTGATTATGTATATTCTTGTAACTTATGATGTAGATACTACGAGTAAAGCAGGTGCACGTCGCTTACGGTGTGTGGCTAAGGCTTGTATAGATTATGGGCAGAGGGTACAGAATTCTGTCTTTGAGTGCGAGGTGACAGAGGCTCAATATTGTCTTTTGAAAGAAAGAATCAAGAGTATTATTGATATATCGTTTGATAGTATTCGTTTTTATATCCTCAGTAAGAATGAAAATAGGAGGGTAGAGGTGTTAGGTGTTGAAACTGCTTATAAAGTGAATGATGCGCTTATTATATAGCGCGTGCGAATGTATAGTGTTACATAAATAATAGTATTTTCGCATGTGCTAATAATCAGTAGATTGGTTTGTTTGTGAAGCATTTTTCTTTTTGTGAAATCGGGAAAAGTGATGATTCGCATAATAATGGATTAAACTTACTGGTTTGTAATATGTTATTTGCCATAGC # Right flank : ACTACAAGGCGATTTGTGACTTGGCTATACTGAGTTATTCTCTATGTGAGGAAGGGAGAATGTATTTGAGCAAAGGTATTTATGTCTTGGAGCATGGCTACCACATTGCCTGTGGTGGAACATATGAAACGGGGCTTGCCACTATACAGTGTGCATATGCTCCGGAATACGCTTCGCATTCGGCGGGAGGAACAATCGTGGTCAATCAGTGTGATTAGAATTAAAATGTAAATATACCTTCAAGCATCTTCTTCCTTGGCCTTCCCTTCCCTCTCTCCCAGCCCCTTTCTGTGCAAGGCGTTTCTCCGACACCAGGGAACACTCTCTCTCCGGCACCGAGGAGGGCTGGGCTTCCCGGTGCCGGAGAAAATGAAATTTTTCATCCTTATCTGATTTGTTGATGAAGATGACTGTGTGACGCAATTTACAGAAATTGCGCTCCTCTATTTTAGGTACTCTCGCTAAAAACACCTATTTTTGTCCGACTAATATTGAATGAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //