Array 1 22146-21446 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000019.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22145 29 100.0 32 ............................. CTCGCGCGACCGGGACCAGATCGTCGACTGGT 22084 29 100.0 32 ............................. ACCATGGCGGCTGGATTTGGCGCCCAGCCCGA 22023 29 100.0 32 ............................. GGAGGCTCTTCAACCTCAGCGGTGTGCCATTC 21962 29 100.0 32 ............................. TGCTGCCCGAAAACGTGCCGCGCCGCCGCATG 21901 29 100.0 32 ............................. AGCGCCGGATCCTGCAACGGGCCCATGACGTT 21840 29 100.0 32 ............................. CAGCTGGCGGGTCCACTGCTGGAGCCAGTACC 21779 29 100.0 32 ............................. GGCTTGAGGTTCACCGTGTACTGCTGGCGGGT 21718 29 100.0 32 ............................. GAGGCATACGAGGAGGAGAGGAACGAAAAGCG 21657 29 100.0 32 ............................. AGCCACATCAGCAGGGCGGCGGCGGTGGCCAT 21596 29 100.0 32 ............................. CGGGGGCTGACCGACTCCGCCGACGACCTGGA 21535 29 100.0 32 ............................. CGGCCGGTGCAGGTGTGGATCGACGGCGAGCT 21474 29 89.7 0 .........................G.GG | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCCCTGGTAGGCCAGTTCCCTGTCTCCGTGGACGGCGTGGTGGCCACGGCGTTGTAGGGCGTCGCAGACGGTGGTCTTGCCGGTGCCGGAGACTCCTTCGATCAGGAAGTTCCTGATGCCCATCGGTGGGTGCCGCCTTCCGGTCGTCCTGGTGTTCGCGGCATCAGGGAGGAGCGTGGTGGTGGGGAGCGTGCCGCGGGGGTCCGACCGTAACAAGAGGGGCCCTCTCGCACACCCGAATTTTTCAGGCCGGGGGTCTTTCAGTGGCTTTTGCGGGTGTGGGGTCTCCGTGTGGTTCGGGGCTGGTGTGTTCGGTGGGGTGTGCTGTGTGGGTCGGTGTGGTACGCCGGGGGTGAGGTGCGTCCGGTGCCTGTTGCCGTGGTCGCGCCGGTCCGGTAGAAATTTCCGAGGTTCATCAACGAGGCTTGGGTGTTTTGTCCGTTTTTCGAGAAGTCATAAAAATGGCTGGTTGACGGTGGAATCTTCCCAGGTCAGTTACT # Right flank : TCCCGCCGCGCGGTGGCGCGGAGGGCTCGGCCGGTGCCGTTCCCTGTCTCGGCGGCGGTGCCCTCGGGGGTCTCGCGCCGCAAGGGGCGTGTCCGGATGTGGACGGCGACCGCCCCGTCTCCACCCGTGCGCGTAGCGTGGAACCCCCTACCCGAGGAGGCGCGTGGTGAGCGAGCAGACCCCCGAAGGCGGTATCAACGACCCGATGTCCGAACCCGAGGGCGGCATCAACGACCCGATGTCGGAGCCCAACGGAGGCATCGGCGACCCTGCCGGCTCCGGCCCCGAGCCCGAGGGCGGAGTGGGCGACCCCGTTTGACGTGCGGCGGTCGGCCCCGCGTCCGCGGGCCGGGCCGCCCCCGAATGACAGGGGCGGCCCCTAGGCTCCGGTCGAGGGGAAAGGGACGCACATGACACTGCGCTGGTACTCCACCGTCATCGAGGCGCACGACCACCGGGCGCTCGCCGCCTGGTGGGCGCGGGCCCTGGGCTGGGACGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23569-23052 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000019.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 23568 30 100.0 31 .............................. GTGCTGAACAACGCCTTCCTGGCGGGGCAGA 23507 30 96.7 31 .............................T GGAGGGTGAGGACGAAGGCGTACTTCACGAG 23446 30 100.0 31 .............................. TATAGCCCACGCCGCTGGTTTCCGCTCCCCA 23385 30 96.7 31 .............................C TAGGTCACGCTATTGTCGACCTAGGTTGCTT 23324 30 96.7 30 ............................G. CGCCCCGTACCGGGGGCCGGGGTCGCGGAG 23264 30 96.7 30 ............................G. CGCCCCGTACCGGGGGCCGGGGTCGCGGAG 23204 30 100.0 32 .............................. TGTCGGCCGGGAAGCCGCCGGCGGGTACTCGG 23142 30 96.7 31 .............................C AGGTCCGCGGGGCGCCTTCGCGCAGGGCTTC 23081 30 83.3 0 ...........A.............T.TTA | ========== ====== ====== ====== ============================== ================================ ================== 9 30 96.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGTCGCGCTCCTGACAGTGGCCCTGCTGGAGCGGGTGGTGCTTCACCGGGTGGAGGTCTACACCACGGCCGCGCTGGTGGTGATGGTGCTCGGCCTGCTCGCCCCCGGCGCGAGTTCGGCGCTGGGGATGCTGCCGCTGGTGGCTTCCACGCTGGGCCTGGTGTGGCTGTACGGGCGTACCCGCCGGGGTTTGGCCCTGTACGCGGGGTATCTGGTCGCCTATGCCGTGATGCGGGTCGTGTTCCCGGCCCTGCTCGGCCTGTGACCGTCGCCGCCCGGAGAGCGGCCCGCTCGGATCGGCTGGCCCTGATCCGTGCGTCTCCCGGCTGTCCCGAGGCCTGTCGTTGGTCGGTCGGTGAAGGTGGGGCCTCGTTGTGGCCGCCCCGCCGATGGGGTAGAAACTCCTGAGGAGCCACGGGCCCGGTGTGGGTGTTTTGTCTGTTTTTCGAGAAGTGGTGAAAACGGCTGGTTGACGGTGGAATCCGCGCTGGTCAGTTACT # Right flank : TGGTCGCCGGGTCATTCCGTCACTTGTCCTTGGGCGATAGGGCGTGGCGGAGGATCTCGTCGACGACGTGTTCGACCGGGGCGGTGGCGTCGATGACGCGGCCTCGGGGGACGTCCTCCTGGGTGCGATGCAGTCGGGTGAGGAGTTCCCGGTCTCCGGGGCGCCCGCCCCATTCGGTCGGGTCGGCGCGGACGCGTTGGTCGATCCGGTGGAGCAGGGTGTCGAGGTCGACGTCCAGGACGAAGACGCCGTCGAAGAGGTGGAGGAACCTGGGGAAGTTCCTGGAGCCGCCGCAGAAGAAGGTGGCCGGGTTGCTGTGGTCGGCGGCCAGGGCCTCGACCTTGGTGACGTTCCAGATGTGGTGTTCGTGTCTGAACCCGCCTGTGGGTCGGCCGGTTTCCGGGTCGCCCTGGTAGGCCAGTTCCCTGTCTCCGTGGACGGCGTGGTGGCCACGGCGTTGTAGGGCGTCGCAGACGGTGGTCTTGCCGGTGCCGGAGACT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 90968-90570 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000019.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90967 29 100.0 32 ............................. TCGGTCCTGTTGGCGGCGCGCTTCCACAAGCT 90906 29 100.0 32 ............................. ACGGCGTCGACGACCTTGTCGGCTGCGGTGCC 90845 29 100.0 32 ............................. ATGATCCGCACCCCGTCAGCGGCCACCACGGG 90784 29 100.0 32 ............................. GCCACTGCACTGCTGAGCACGGACGAGGCCGC 90723 29 96.6 32 ..............T.............. GGCAATGGCCCGAGGAATGCACGGGCGTGGGG 90662 29 93.1 32 .............GT.............. GGCGACACCTCCCCCTCACGCCGGGCAGTCAC 90601 29 96.6 0 ........................C.... | CC,T [90574,90598] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CACAACGCGCTGCTCATCACGCGCAGGGGCGGCGGCGGGCCGCAGGCCTCGCCGGTGACCTGCGGCGTGGACGCCCAGGGGCGGATCGTCGTCTCCACGTACCCGGAGCGGGCCAAGGCCCGCAACGCCGCGCGCGATCCGCAGGTGAGCGTGGTGGTGCTGTCCGACGACTTCGGCGGCGCGTGGGTGCAGGTGGACGGGGAGGCCGAGGTCGTCGACGGCGAGGACGCCGTGGAGCCGCTGGTGGAGTACTTCCGGGTGATCGCGGGCGAGCACCCGGACTGGGAGGAGTACCGGGAGGCGATGCGCCGCCAGGGGAAGGCGCTCGTCCGGGTGACCCCGAAGCGCTGGGGCCCGATCGCCACCGGTGGCTTCCCCGCGGACCGCCTGCCCCCGTCCCAGGGCTGAGCCCGCCCCGGGGCCGGGTGGGTGTTCTGTCTGTTTCTCGGAAACGTTGAAAACCGCCGGGTCCCCGGGTGTGTTCGCCCAGGTCATTTACT # Right flank : GGGCGGCCGAAAAATCGCGGGCGGCCGGAACCGTCCCTTGGTACGGTGCGCGGGTGCCGCCGGTGACCTTCGGCGGCCTGCCGGGGAAAGGGGCCGGGTGGCCATGCGGGAGTCCGAAAGGCGTCATGCGATCGCCGCCGCCACCGCGATCGCGGCCTCCCTCGGCCTGGCGGCCGACGACGCGGTCGTGCTCCACGACTCCAACAAGCTCGCCCTGCGCCTGCTGCCCTGCGACGTCATGGCCCGGGTCGGGCCCCTCGGGCACGGGGTGGCCCGGTTCGAGGTCGACATCGCCCACCGCCTCGCCGCCGCTGGCGCGCCCGTGGCCGCCCTCGACCCCCGGTCCGGGCCCCGCGTCCACGAGCGCGACGGTTTCGAGGTCACGCTCTGGACCCACTACACGGCCCCCGCCTCCGGGCACCCCGGCCCCGCCGACCACGCCGACGCGCTCCGCCGCCTGCACGCCGGCATGCGCGGCCTGGACGTCCCGATGCCGCACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58999-59209 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000027.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58999 29 100.0 32 ............................. AGGAACAGCAGCAGGATGCCGTCAATGGCCAG 59060 29 100.0 32 ............................. CCCGCCTGAAAACCGCCGAGGCCCGCGCCCAC 59121 29 100.0 31 ............................. ACCTCCGGGCGGCGCAGGACATCGCCGCGGC 59181 28 96.6 0 .......................-..... | T [59208] ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCGGCTCAGGTCGATGCCCTCCCGGTTGGCGATCGACGCGAGGTAGATCAGCACGTCGGCCAGTTCCTGGCCGAGATCGCCTACGGTGCTGGTCGGGTCGAGGCCGAGTGAGGCGCGCTCGCGCACGGCCTTGCACACCTCGCCGGTCTCCTCCGCCAGCTTCAGCGCCTGCTCGACCAACGTGCAGTCGGAGAAGCCGCGCTCCACCTCCATCTCCGCCACGTAGGCCTGGATCCGATCCAGGGTGAGCGGGCGGTCGGGCAGCGGTTCCATTCGGGACCCTTCTCGGTCGGGGGCACGGACGCTACCAGCGGGGACGAGGGGAGCGGTGGGGGATCGGGCCTCCCGCAGCCGAGGTGTGACCCGACCCGGGTCACACTTCGCGAACCTCTTGAGCCCGCGATGCACCTCGTGCCACAGTTACCCGAGGCTTGGGCCCGCCATTCACCGCCTCTATATAAAGCGGAGATAACGGCTTACGTTTTCCCTGGTCGCGAACT # Right flank : GAAGCCACGATGTTCACCGCGGTAAACGCGGTGAACACCATGTGCGGAAACCGCGCACGTTCAGCAACCGTGTGTGCCACTCTCGTACCTGCCAGGCCTGCGGTGGAACGGGAAAGGTACAGAAGTGACGGACCTCGACCGGATGCACGCCGAACTCGCCCGGCGTCTCGACACCACCGACGCGATCCGGGCCGCGTTCGCCGACCATCCCCGGCACCGCTTCATCCCCGACCTCGTGTGGCCCGATATCCAGGGCCTGCCGCTCATCCGCTCCGCGGCCCCCGCCCGCTGGGCGTCCTACATCTACGGGGACGACGCGGTGGTCACCCAGGCCAACGACGGGCGCGGCGGACCGGTCAACGAGCCCTCCTCGTCCTCCTCTGCCCCCCAGCTGATGGCCGACATGATCGCCGCGGCCCGGGTCGGACCGGGAACGCGCGTGCTGGAGATCGGCACGGGCACCGGGTGGAACGCGGCGATCCTCTCCTCCCTGGCCGGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 112652-112439 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000006.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112651 29 100.0 32 ............................. GGGCTCCTGTCCGGCACGTCGATCCCGGCCGG 112590 29 96.6 32 .........................A... ACGTCGGTCTGACCGGCGAGCTGGCTGCACTC 112529 29 96.6 32 .................C........... TGCGGCCCCCACACCGGCCAAACCGTCCACCA 112468 29 82.8 0 .......T...A..T..........GG.. | T [112445] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GGGCTGCTGGAGCGGTCGGGGAGCGATCCGGTGGTGGACGAGCTGCGCCGGCGGCTCTACGAGGCCGGGACCCGGTCGTTGGAGGGGGTATTGCGGTCGCACCTGCCGGAGGTGGACGTGGAGCCGTCGTTGGCGCTGCTGGTGGGCGGCGTGCTCACCCGGGGCGCGTTCCAGGGGCGGCCGGCGACGGAGGAGTTCGTGGCGGACCTGGTCGATCGCGTCCTGGCGTCGACCGGGCGAGGTGAGGAGGGGTGAAGCCGGAGCGGAGGGCGTCGGGCGGGTCCGGCCGGGGGCCGTTTTGATGGCGGTGGTCCGCGCCGGACTGTGTCCGTCTTGTGGGCGGGCGGCACGCGTGTTCGTCGCGGGTGTCCGGCGTCCTGTTCTTGAGTGATCCGGTGGGAAGATCTGAAGTCAGTCGGGAAGCCCCGGGCGTTTTGTCCGTTTCTTGAGAACTCATGAAAACGGGTGGTTCTTCGGGGTATTCGCGCAGGTCATTTACC # Right flank : TGGCCCTCCGTATATGAATGGTTCCGGTTTCGGTGGTTGATGTGTCCAGCCACGCGTGTAACCAAAAGCCACTCCGGACGCACAAGGTCGAAATGTACTCATGGCTGCTGCTGGATCGAGGCCGGAATGCCTCGGAAAGCGATGGTCCGTGTGGTGTGCTGTAAGGCATGGAACACGAAGAGAACCGAGGTGACCCGGAGGAGCCTCCGCGAGGCAGAACGCTGGTCGACGCTCTCGCGGCGGCCGATATCAAACGGCTGGTGCGTGCGTCACGCGAGGACGACGGAGACAAAGCGGAACAGATCCGCAGAAGGTATGCGAAGAAGTAGGCCGACCTCGGCCACAAGCCTTGCGGGACAAGGCTTTCGTGTTACTTTCGTGGCCAGGTTCATGTTCCCGCCCGCCCTGATCGGAGCCCCCATGGAACTGGAGCTGCTGGCCAAGGACGACAAGTCCGGACACGGAGGCTGCCCCTCCGTGTATCTCAGCGACACGGGCGA # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121160-120765 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000006.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 121159 30 96.7 31 .............................T GAGCGTTGACAGACCGCCACCCCGGATGCCA 121098 30 100.0 31 .............................. TCAATCCCCGATGAGACAGGGGATATGGCCA 121037 30 93.3 31 .....................A.......G AGTCGCCCCCGCCGGAGCCCCCATGGCCAGC 120976 30 96.7 31 .....................A........ TGGGCAAGGACTTGTCCGGCGACATCTCCCG 120915 30 96.7 31 .............................A GCGCTTCCCCGACCTCTTGCGGGGTCATGTC 120854 30 93.3 31 ............................TG TGCGGTTGAACTCGTCGAATCGGATGCCCAG 120793 29 80.0 0 .....T.....A..T........C.-...G | ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.8 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGGCTGCGGGGGCAGGCTCGGCCGCGGCCCGGTGGGCTGCGGGCCGTGCGACCTCGCGCACGGGTTCCGCTACGTCGCCCTGGAACCCGACCGCCCGGGTGTCCCGCCGGGGAACGAGCACGCGGTGCGGGTGAACGTGTCGGTGGTGCGGCGGCCCCACGTGACGTCGGAGAACGAACTGCTGCTGCGGCGGTCGGCGCTGCCGGGGCTGTTGGCGGGGCTGCTGCCGACCACGGAAGAGGCGCAGCGCTTCGCCGCGGTGGCGCGGCGGGTGCCCTGGCCCGAGCGGGCGGCGGCGGTGGAGGAGCTGGTGGAGGAGATGTTCCGCCGCTGCCGGGAGGAGGGGAGCCTCCGGGCGGGGGAGGAGTGAGGGTGCGGGGCGGCGGGGCGTGCGCGCCCGGGTGCTTTGGGGGCTTTAGGGGCTTTTGGGGTCGGTGGCCGATTCTTGGAAAGTTTGAAAAACGCCGGTTTCCTGGTGGGATATCCGCAGGTCGGTTACT # Right flank : AGTGGGGCGGGGAGCACCCCTTCACCCCTCGCCCCTCGGGCCTCAGGGCTGGAGGACGTACCGGCCCCGAACTCCGCCCTTGGCGAAGGCGCGGTGCGCCTCGGCCGCCTCGGCCAGCGGCACGACCGCGTGCACGCGGGGTGCCAGCTCACCGGTCGCGGCCCGCGCGAGCAGCCCCGCCAGACGCACGCCATCCGGCACCACCCCCACCGTGCGCACGTCGATCCCGCGTTCGGACGCCACCGGGAAGCCCGGCTGCACCCCCACGAACACCCCGCCGTCCCGCACCAGGCCCAGTGCGTCCTCCCGAAGGGCGGCTGTGTCGGCGACCGCGTCCCACACCCCGGCCGCCCGGTCGGTGAAGTCCGCGCCGAGCCCCCTCACGAAACCCTCGTCCCCGGCGCGGGCCAGCCCCGTGACCCGCCAACCGCGCTCCCGCGCCAGCGTCAGCACGTACCCCCCGACGGAACCCGCGGCGCCCGTCACCAGCAGCCGGTCCC # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216129-215914 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000004.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 216128 29 100.0 32 ............................. GCCCCCACCCCCTGCACCTGGTACGTGGTGCG 216067 29 100.0 32 ............................. CCGGCGCCGATAGGACGTGCGCGAGTTCGGCG 216006 29 100.0 35 ............................. CATGCACTACTCCTGCGATCGGGGCACGCGGGGCG 215942 29 75.9 0 ...........GTAT......C..AG... | ========== ====== ====== ====== ============================= =================================== ================== 4 29 94.0 33 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : AGGAGCGGGGGATGACCTTCGACGAGGTGTGCGCCCACGAGGACACCCCGCCGCGTGCCATCCTGCGCGACCTGGACCTGGTGCCGGAGGGCGGGGAGGGCTACCTCTACCAGGCCTGCTGATCACGGATTGCAGGCGGGACCTAAGGCCCCGTTATCCTTCCCGGTTCCGTGGGGAACGCCGGCGCCGAAGGGGGACATTCCGCCCGGTCCTGGCGGTAACGCCGACCTTGGGTCGTCCGGAAAGCGCGGGGGCCGCTACGGACCGTGTACGCAGAGTTCCCGCCTGGTGCACAATGAAGCCGTCGGTGTTCCCTTCCTGGAACTTTCACATGCCGGCAGGGCCCCGGGGGTGCGCGCACCCCCGGGGTTCGTGCTTTCCGGGGTTCTCCCGCGCGGCGCCCACCCGGTGCAATAAAGTGCCCTTCGGGGCTCCTGTCCGATTTTCAAGAAGTTGGAAAATCGCCCGGTTTCCCGTGGAATCTTCGCAGCTCAATTACT # Right flank : TCATGACCAACAATGAGCCGTCCGGTGGCCCCGCGCTCCCGTGCGCGGGGCGGGCCCGTGCCGCCGGCGGCGTTGGTCGCGTCCGGGCTCCCCGCGGGGCGGAGAGGGCGACGGAGCCGCCGGTGGTCGGGGGAGCAGGGTGATAGCGCTAACAATCGGCGAGTGAAGGCATCAGCCAAAGCCAAGGGGGGTGTCGTGAAAGCCAGCGAATGGGATATGTTAGCGCACACCCGTGCTCCTCGGGTGGGCCCCGGGTGCGGGGGCCGGTCCGGGCGGAGCACGCTACGGCATCGGCTGTGAAGGAGCTGCGGGTGAGCCAGACCCCACCGAACCCCGGCGCCGCCCGGGAACCGGCCATGACCGACGTCGCCCGGCTGGCGGGGGTGTCCCACCAGACGGTCTCGCGCGTCCTCAACGGCCACCCCAACGTCCGCGAGCAGACCCGGCTGCGCGTGCGCGCCGCCATCGAGCAGCTCGGCTACCGGCCCAACCGCGCCGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.20,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 524809-524536 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 524808 29 93.1 32 ........C..A................. AGATGGCTGCCCAGATGGCCCGCCTGGACGTG 524747 29 89.7 32 ........C..A..............T.. ATCTCCTCCAGACCGGGGCGCCGGACCACGAG 524686 29 100.0 32 ............................. CCCCGCCCCATCCGAATCCACAAAACCGTGTG 524625 29 100.0 32 ............................. GGTTCGGGAGCGAGAGTGCGGGGAGCTTCACC 524564 29 75.9 0 ........C...T.G.......C..G.GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTGAGCCCTGCGCACGCGGGGATGGACCG # Left flank : CAGGGGCGCACGGAGCGGGGAGAGGTGACGATCGATGTTCTGCGGCTGAATCGCGCCGAACTGGTGAGGGGGAGGAGTTTCGCTTTCGTCAGGGCGAAGTCCATGCTGCGTGATATCGACAGGCAGGTGCAGCAGGGCGCAGTGGCGCGTGCAGAAGCGGTCATGCTGGCCCTGAAAGAGCAGCCGTTCGCCGATGTATTGCAGGCGATGCTCAAGGTGAGGCATCTTCCGGGGGTACAGGTGGTCCTGGAAGACAGTGAGGTGATCCGAGCCCTGGAGATCATCGCTGATTCGGGGGGATAACGGCGGGTGGGGTTCCCGCTCTTGAGCATCGTCACTCCTTGTGGTCGAATGGTCGTCTTCCATTGCTCAGGGTGAGGAAGGCGCGAGTCTTGAGCCTGCGGTGCACCTCGTGACACAGTTGCTCCGGGTGTGGGCCCTCGCCTCTCGCATTCGCATAACGCGGAGATAACGACCCGTGTTTTGCCTGGTCGCGAACT # Right flank : GCGCCAACGGCATGGACGGCCTGTGGCCCGGGTGGGAGCGGCGCCCTCCGGGCTGTGGTCGGGGGCTCCGGGCGGGTGGGCGAGCTGGGGTGGGGGTCGCGGTTCTTCCTCCCGAACCCCCGTGTGGCTGAGCGGGGAGGGTGCGTGCGGGCTTCACCCCTGTGTGTCTGGGGAGGGAGGTACGCCCTACCGAAACCCCCTGGAGTCGGGGCATGGATCAACGCTGACCGGCTGTGCCTGAGGCCCAGAGAGAGCGCACGCTTCACCCCCTATGGCGTTGGGAGGGCATGGGTGTGCTCTACGTTCGGGCCGCTCCCCGCGCCCACCACCGTTTTCAGGGGGCATTCCTCCCGCCGCTGTGTCTGGGCTGGGATCGCCTCGCTCGACCCAGCCCCGGATGACACCCCCACCACCGACGACGTGCATCGAACGCACCACCCCTGCGCTCTACCGCTCGCCGACTGCGCCGGGGCCAGGTCCACGCTCCGCTGGCCGCCCAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCTGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 527725-527260 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================== ================== 527724 29 100.0 33 ............................. GGCCGGTCAGAGAGGGCGACCCCTCCAACCGGC 527662 29 93.1 32 ...............AT............ CCGGGGGCGTTCTCGGCGATGAGGTCGGCGAG 527601 29 100.0 33 ............................. GCCTGCGAGTGCCCGAAGCACAGCCCGCCCAGC 527539 29 100.0 32 ............................. CCCCCGAAGGACCGCGCCCCCTGGGTTTCCGA 527478 29 100.0 32 ............................. GGCACCGGCAAGGCGCTCTCCATGGCCCAGAA 527417 29 100.0 100 ............................. ACCGCGGGTGAGACGTGCGCCGGTTCTCCGAGTGAGCCCCGCGCGCGGAGCGTACTGCCTCGCAGTCCGTTTGAGTGCCCTAGAGTGCCCTCACATGCCT 527288 29 69.0 0 T.A...........T.....A.C..GGTC | ========== ====== ====== ====== ============================= ==================================================================================================== ================== 7 29 94.6 44 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GCTCCGCTCCAGGGGGTGAGACGGACGTGGAGGTCTCCAGGAGGGTCACCCGTTGGGAAGGGCGGTCTGTGGTCGCGCCCGACCAGAACCTTTGGCTTCCAAGACGGTCACCGCTTGGGAAGGTACAGACCGGCGGAGCCGGATCCGCCCCCACGATGCAACGGAGGGCAGACGGACAGGCAGACACGTGGGCCGCACGTCCGGGGTGGTGGGGGTGTGCTGTCCGGGGGTGGGTCCGGGCGAGGCCTGCCCCGCCCGACCGCTCGGAAAGGGAGGAAGGGTCCGCCTGCACAGCCGCGGTTGCTCCCGACCTCGCTTGGAACACCAACCCCAGACGCGGTAAGCCGCACCAGAACACCCTCCTGTACCCCGGGAGAGGACGGACGCGCGTCTTGAGCCGGTGGTGCACCTCGTGACACAGTTGCTCCGGGCTTAGGTTCTTACCTCTCGCATTCGCATGACGCGGAGATAACGGCTCGCGTTTTGCCTGGTCGCGAACT # Right flank : CTCCTGCCCCCAGCGCTCTGTCATCAACCACAAGCGCTGTTCGCGTGAAGACCACCCCGATGTCCATGCACGACCGCAGCGGCGACGGTTTCCGCTTCTGCGGTACATGCTTCACGCACTCGAGCGGCGAACTGCCCGCGTCGGGTGAGGAGCGCCCTTCTACGACGCGTGCCCGCCAGATCCAGACGGAGTCCCTTTTGCACATCGAGCACATCAGCATCAACGGAGTCCGTGGCTTCCACGGCCCCACCGCTGCTAGTGAGCTGGAGTTCCCCGTCCCCTCCGACGGTCGCGGAAGCTGGACCGTCCTGGCCGGTCGCAACGGCTCGGGGAAGACCACGCTGCTGCGCACGATCGCCCTCGCGTTGGTCGGCCCCTCCTTCGCGCGCAACCTCGTTCCCGATTTCGACCACTGGGTGACCCAGGGAGCCGATACCGGGGAGGTGACCGTGGCCATCATCCCCGGGGCGGAGGACACCGGCTCGGCCGCCGGGATGACC # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 589233-588532 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 589232 30 100.0 31 .............................. CCTGCCACCAGTCCGACGAGAGGGCGCGCTG 589171 30 100.0 31 .............................. CGCGTGAGGCGAACCGGCTCATGAAGCGGGT 589110 30 96.7 31 .............................G TCGGCTGGCGCGACGGTCTCTGGGGCCAGAA 589049 30 96.7 31 .............................G CGTCGGCGATGAACCCCGGCTCCCCGCTCAT 588988 30 100.0 31 .............................. TCGTCCCGGGGTAGACGCCGAGATGGCGCGC 588927 30 96.7 31 .............................G CGTCGGCGATGAACCCCGGCTCCCCGCTCAT 588866 30 100.0 31 .............................. TCGTCCCGGGGTAGACGCCGAGATGGCGCGC 588805 30 100.0 31 .............................. GTACGCGGTCGCTGCGGTCTGCGACCGCCTG 588744 30 96.7 31 .............................C TGGTCGAGCGGATCGCGCTCGACCGGTCCGA 588683 30 100.0 31 .............................. GGGAGTTGGCCGTGGTTCCCGGGTTGCTCCA 588622 30 90.0 31 .........................C..TC GACTCTTCCCCGTCTAAATGGAGAGACAGAA 588561 30 80.0 0 ............TCT..........G..GA | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : TCCTCGGTGAGTTCGCGCAGGGCCGCGGTCTCGGCGGACTCTCCGTCCTCGACGTGGCCGCCGGGCAGGACCGCGTAGTGGTGGCCGGGGCAGGGCTCGCCCTCCGCCGGGACGAGCCGGTAGCGGGCGCAGGAGTCGGTGGAGGAGTGGCGGCGGAAGCGTTTGATGAGCAGGACCCGGTCGTCCCGGACGACGACGGCGACGGCTCTGGGAATCGGCATGCGTTCCAGGATGGTGGGTCGTGGGGCTGAGCGCCAGGTGGGGTGTGGCGTGTGGGGGGAAAATTGACCTGTGTCCGGTTCTCGGACGGTGTTCGCTGGGGTGGGTGCGTCTGCATCGGCTCGTGTTGAAGAGGGGACTTCGGCGGAAGGCGTTGCCGGTCGTGGGCCCATCCGGTAGGAAGTCCTGGAACCGCTGTTGAGCGGGTGGGCGTTTTGTCTGATTCTTGAGAAGTTGTAAAAACGGCTGGTTGACAGTGGAATCTTCCCAGGTCAATTACT # Right flank : AGTTGTGGTCGGCGGTCACGCGCTGGACGAGCCCGACCCCGATCCCGATCCCCGCCCCTGGGCCACGGACTCCTGGTAGATGTCCGCGTACGTCCTCGTGTCCCTGATCAGGTCGTCGCAGAAGGCGGCGACGTCGAGGCCGATGAGTTCCATGACCCCCTTGCCGGACGCGACGCCCTCCTCGAAGAAGTCGACGATCCCGCCGAGCAGCTCTCCGTCCGCCAGACCGACCGGCCCGACCTTGAAGTAGTACCGCTGGATCTCCTTGTAGACGATCCGGTAGTCCGGCGGCAGCGCCTTGACCCGCGCCGTGTGCGCCCGCCACTGCCTCTTGCCCTCGATGATGTCCTGGACGCCCACGTCAGCCTCCCAGCCGGCCCAATTTCCTCGCGACGTTCCGGTTCAACTGCTCGCGCCACCGGTCCCGGTGGCTGCGCGCCCCCTCGCCCCCGGCCAGGGCCGCGCAGAACCCCGGGACGTCGTCGCCCAGGACCTCCCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 599210-598676 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 599209 29 100.0 32 ............................. ACGGTGTTGACCCTGGTGTCCCAGAGCGCCGC 599148 29 100.0 32 ............................. TGTTCATCCATGACGCACACGATTTCAATGGG 599087 29 100.0 32 ............................. ATGACGATGCGCTCCCGGTCCTCCACCACGAT 599026 29 100.0 32 ............................. ATGTTGGTCTCCTTGGGGTGTGGGGCCCGGCG 598965 29 100.0 32 ............................. CATGACCACGAACAGCCCCGAGGGGGACCCCG 598904 29 100.0 50 ............................. CGGATCGCCCCGCACCACCCCCACGACGGGCCCGACGAGAGCGACCAGGA 598825 29 100.0 32 ............................. ACCCTCGCCGCCACTGTCGCCACCGCCCTCGG 598764 29 96.6 32 .........................A... ACCGCCCGCGCGGACATGACCGCTCTGGAGGA 598703 28 89.7 0 ........-........C.......G... | ========== ====== ====== ====== ============================= ================================================== ================== 9 29 98.5 34 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTGTGCCCGCCCCGCTGTCGTCGGTACTGGCGGCCTGCCTGAACCGTGACGCTGGGCGTCGGCCCAGCGCCCGCCGGGTGCTCGCGGTCCTGCTCGGATACACCCGGGACGATGTCCTGCCGGAACCGGGGGAGCTTCACGAGCGGTCCGGCCGGTTCGGGACCAGGAAGAGGTGGATGCCTCTGGAGGTCGATCCCGGAGCACTGGAGAGCGGGTTCAGGGCTCCCTTCCGGGAGGGGCGGCGGCCGACTCGGGTGTCGGAGACGGAAGGGTTCGGCTCCGGTGGTGGTGGTCTGAACCTGATCTGGCAGCCGCCGGATATGGAGGGCGGCGACGGGGACTGAACCGGTCTGACGGGTGCGGGAGAGGGGAGTTGCCTCCTTTCTCGTCGTTCGGTAGAAAACCCTGGGACCTTCGAACGCGGGCAGGGTGTTTTGTCCGTTTCTTGAGAACTTGTAAAAACGGCTGGTTGACGGTGGAATCCTCGCAGGTCAGTTACT # Right flank : ACGGCAAGGCAACGGGCCGCCGTCCGCCGCCCGCCGTCCGCCGCCGCATCATCCCGTCATCGACGGGTTCCTCGACGTGCCGGGCCGGTCGGGCCCTGACGGTTCTTCACGGCCCGCCGACCCCGGCACAGAATTCAGGAGATATCGCGGAAGAAGGCACGGATATCGCCCGCGAGCAGCTCCGTCGCCTCCATCGCCGGGAAGTGGCCGCCCTCGGTGAACTCGCTCCAGTGGCCGATCGCTTTCCACGGGTCCACCGCGCGGCGCATGACCGGACGGGCGTCGAATACGGCCCATCCGGACGGCACGTCCGATGCCATCGCCAGGTCGATTCCGGAGTGCGCGGACTCGTAGTAGAACTGCGCGCTCGACTCCCCGCTGCGGGTGAACCAGTACAGGCTGATGTTCGTGAGGAGCTGGTCGCGGTCGACCGTCTCGTCCGGCGTCCGGTGGGCGCCGCCGTTCCGGGGCCTGAACTTCTCCGCGATCCACGCGAGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 601358-600902 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 601357 29 100.0 32 ............................. AGGATCCGGACCAAAGCGACGTTGGTCAGGGC 601296 29 100.0 32 ............................. TGGGAAAGGGACCTGTGCGTCCCGGCCCTGGA 601235 29 100.0 32 ............................. CGGCCCGCCGCGGCGCCGTCCCCGGACATGGG 601174 29 100.0 32 ............................. ACCACCCGCCGTATCACGGAAGCCATCGCCGG 601113 29 100.0 32 ............................. CAGTCCAGGCGGGCCCGGCAGATCACCCCGGT 601052 29 96.6 32 .........................A... TTGTGGTCGGGGGTCACGAGCCGGATCGGCAT 600991 29 96.6 32 .........................A... CGGCCTCCACCATCGGCCAGACCTACCAGACC 600930 29 82.8 0 ..A......................ATTG | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGGTGGTGTTCGGCCTCGGCGGAGTAGGCCTCGTGCAGGGCGGCGTTCTCGTCGGAGTGGTGGAGCTGGGCGGAGTCGTCCAGCTCCCAGTACAGGCGCAGCGCGAGAGCGCGGTCGCAGCGGGGGTGGGTGACGACGGCGAGGGGGGACCTCGAATCCGTCGTCCCAGTTGTAGGCGCTCATGAGTGCCCAGAGCCGCCGCTCGTCGGAGAGGGCGGTGACCCGCTCAGCGAGGGAGCCGTGGTCCTCCGCGTCGTGGGAGAGGATGCGCTCGATCGAGGGGTCCATGGCGCGGTTCTCCTGGTCGGGGCGGTGGCGGCTTCACCGTACCGAGCCCTGCCGTCAGATGGCCGCCGTCGATCCCGGGTTCCCATTGCCGTGGACCGGCCCGTCCGGTAGAACTCCCTGAGAGCCCACGAAGATGCCTGCGTGTTTTGTCCGTTTCTTGAGAAGTTGTAAAAACGGTTGGTTGACGCTGGAATCCTTGCAGGTCAGTTACT # Right flank : GGCGCTGCCCATCACCCGCCCGTGAGCCCTGCGCTTTGGCCACTGTCAGTGGCCTGCGCGATCCTGGTTCCATGACCGACCGAACCGAAACCGCCACCGCTGCCGAGTCCGCACCCGATATCGAGCACCTGGCCGCGACCCTGCGCCGCCGCCGCGAGGAGCTGGCCGGTGCCGCCGGGGTCCGGATCGGACACGGCCAGGTGGTACACCGCCTGGCGACGCACCTGTGGGCGGGCGTGGAGATCCCAGCGGTCGGCTGTCACGCGGCGGTCGACCCGCTGCGACTGCTGGCGTCGGCCGGCCCGGTCACCTGCCGCCGGTGCCTCGGGGCCGGACGCACCGGCCGGGAGCAGGTACCCGGGCAGACCAGCCTCCTGGAGGAGTGAGCCGTTCGGCAGCCGCCGACCGGCCCGGGGGCGGTCGGCGGGGACGCCTCCCCGGGCGTCGGTCCGGTGCGAACCTCCGCCTGCCGCGCGGGACTCTCACCGGTATCCGCAAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 973986-973589 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000001.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 973985 30 100.0 31 .............................. GCACTCGCCACGGCCCTGGAGGCCGCTGGCC 973924 30 100.0 31 .............................. CGTGGATGGTGTTGGCGGCCACGGGCACGTG 973863 30 100.0 31 .............................. AGATCCCCGCCCCCGTGGTCGGTGAGCACCA 973802 30 100.0 32 .............................. CGATGTCTGCGAGCGGGTCGCCGGGGTCGGGA 973740 30 93.3 31 .........................G...A TCCCGGCCTGGGTCGCGCCCAGCTTCATGGA 973679 30 93.3 31 ........T....................T AGTCCGGCGCCAGCGGCTCTTCGCAGGTGTT 973618 30 93.3 0 .....................C.......C | ========== ====== ====== ====== ============================== ================================ ================== 7 30 97.1 31 GTAAGCCCCGCGCACGCGGGGATGGACCGG # Left flank : CCAAGGCGGGCGTCAGCGTCAGGTCGCTGCGCTACTACGAGCAGCAAGGGCTGCTGCACTCCACGCGAAACGCGGGCGGTCAGCGCCGGTACCCGGCCGGGGCCGTCGAGCAGGTCCGGCTGATCCAGGAGCTGTACTCCTCCGGTCTGCCCAGCAGGGCCATTCGCGAGCTGCTGCCCTTCGCCGAATCCGGTGAGGTGCCGGAGGAACTGGTGGAGCTGCTCGCGGCCCAGCGCGACCGCCTGGACCGGCGGATGACGGACCTGAGGGACATGCGCGAACGGTTGAACGGGTGCATCGCCGAGGCACGCGGATCCCGGCCGGGCGCCTCCGGCTGACGGCAGCGGTTCCGAGCGGGGATGGGTGGGTGTGGCGGCTCTGCGCCCGGCCCTTGAGCCGGTGCTGTTCCCCGTGGCAGAGTTGCCCGGAACGAGGGTCGGTCTCTCTCCGGATTCGCATAACGCGGAGATAACGTCTCACGTTTTCGCAGGTCGTGAACT # Right flank : AGGACCCGCTGCCCCCGTGCGAAACGCTCCTGGCTCGTGTGGCCGAGGTGCGCCTTGGAGTCCGCGCTCGTCGGTGTCGTCCGCGTGGGTCCCGGCCCCCGGTGGCCCGGGCCTGCCCGGGGGTCTCGGACGGGTGTGTCGCGCACGGGCGGCGTTCGGCGTCGGCGCGGAGCGGACCGGCCGGATCAGCCGGTACGGGTACACCGCGCCGGTGGGCGTCGCGGGGTTCGGCGCGCACCGACGCCGAGGTTCCGCACCCCGGTCAGCGCCGCACCGGCGCCTCCCGGTCGGCTTCCGGGACCCCCGCTTCCCCGCCGGTCACTTCCCCGGCGGGCGGGTAGGCGTCGCGCAGGCGTTGCAGGGTCGCCGCCACCACGGTGCGGACCTCCGTCTCGTGCAGCGGCGCTGAGAACAGCGCCGAGCTGAACGAGAAGCCCTCGACCAGGGTGAACAGCAGCAGCGCCTCGCGGTGCAGTGCCTCCTCGTCGATCCGGCGGTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 62518-62853 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000024.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 62518 30 96.7 31 .....T........................ TCGAACGGGCTCTGGTGAACATCGCCGGTTA 62579 30 100.0 31 .............................. GGGGCGCGATCGGCCTGAAGGGCAAGCCGCA 62640 30 100.0 31 .............................. CTCTCACTGGTGTGCGTATGGCCGCGTACCA 62701 30 96.7 31 .............................T CCAGGATGGCGATGGCGGCCACGAAGGTTGT 62762 30 96.7 31 .............................C GGCCGTCCTCGTGGACGAGGCCAAGGGTTAC 62823 30 90.0 0 ......................C.....TC | C [62848] ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGACGACGCGCTGGTCGACCGGCTGGCAGGCGAAGGGGTGGCCTACGTGCCGTTCTTCCCGCTGGGCGGGTTCAGCCCGTTGCAGTCGTCGGCGCTGTCGGCGGTGGCGGCCCGGCTGGACGCGGCGCCCCTGTCCGTCGCGCTGGCGTGGCTGCTGCACAGGTCACCGAACATCCTGCTGATTCCGGGGACGTCGTCGGTCGCGCACCTGCGGGAGAACGCGGCCGGGGCCGGACTGAAGCTGTCGGGGGAGGACCTGGCCGAGCTGGACACCATCGGCCGGAAGTGAGCCGGGCCGTGACCCGAGCGGGTGGGGTGGGTGGGGGTGGGCGGTGGTCTCCCGCCGGCGGTGTTGTCCGCAGGTGGACGCCTGTTGTCGTTGTCCTGCCGATCCGGTAGAAAACCCGGAAGGGCATTGTTGGCGCATGGGTGTTTTGTCTGTTTTTTGAGAAGTTGTAAAATCGGGTGGTCTCCCGTGGTATTCGCCCAGGTCATTTACT # Right flank : CGTGCCGGACGCCCACGGCACCTACAAGGCCCCAGTGAACCGCCCGCGATCCACCCCCGGCCCGCACCTCACCCCGCCGGATGTCCTGACGGAACCCCCGGCCCGAGACACCCGGCTTCGCTCAAGGAGCGGGTGACTCCTGGACGGTCATTTCAAAGGCCAGCTCCATACACCGCAGGCGGGCCGGGGAGAAGTCGTACGGCATCTTTCCGACGGCTTCCACCAAACCCATGGTCTTTTTCGTCCTGCTGGAGTCCTGACCGGTCTCGTCCCCGCCTTCACCGGCGGTGTCGGGGTGCAGGGCATCCCAGGAGTCGAAGAGCGCCTCTTCGCTCTCCGCCAGGTCGGAATCATCGATGGCGGCGTGCAGCATCAGTTCGAAGGCGTGCCGTTCGGCGGCCACCTGTGCCACGCGGGGGTCGTCGACGGCGACCGTGTCGTCGAGCGCCTCCTCGGCGGCGTCAACGCGGTCGGATTCCTCACGTAGATCCGGGTGGGCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66337-66853 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZK01000024.1 Nocardiopsis flavescens strain CGMCC 4.5723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 66337 30 96.7 31 .............................C GACTTCACCCGCTACTCCGGCCCCTCCGCGG 66398 30 96.7 31 .............................A CCGGCGCCAGCAGGAACAGCACCACGAACGT 66459 30 96.7 31 .............................G AGGAGCGTCGCGAGGTAGAGGGCTTCGTCTC 66520 30 96.7 31 .............................A CCACCACCCGCGCCCACGCCCAGGACGGGCC 66581 30 96.7 31 .............................G AGGTGCCGCACTCCTGGGTACGTCAGCTGTA 66642 30 100.0 31 .............................. TGACGGTGACGGGGTTCCCGAAGATCTTCAC 66703 30 100.0 31 .............................. ACGTCGACGTCCACCACCGCCGACACGGGCT 66764 30 100.0 31 .............................. GGGTGCGCATCGCCCAGGTGGTCGCCGGGAT 66825 29 90.0 0 .........................-..TG | ========== ====== ====== ====== ============================== =============================== ================== 9 30 97.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ACCGTCTTCAGCAACTCGTAACTGATCGCCACTCCCGTGCCTTCCCGCCGCTTCGGCCGCGGCCTGCGGCCTTGTTCGTATTACGATCTCAATGTTCGCATCGTAAAACAAGCTGTGCACAGAACGGAAGAGGCCGCAGGCGGGCCGTCGCCTGGCGAAGACGCGCGGCGCTCGGCGGACCAGTGCTCGACGGGGTAGCGCCAGGAAGCCGGGATGGACGCGAAGCGCAGGTGGAGGCGGGGGCGGAGGGGTTTCGCGGGATGGGTTCCGCCGCCGCGCGGGCTGGTGGGTCCGCTGTTCGTGTGAAGGCTCCTGGTTGATGAATCTGTGCGCGTTGAGCCCTGTGCTGAGGGAGGGTTCGTCCGGTTGGCCGTTGTCGCGCTCTTGCCCGTCCGGTACAAAACTCGGGGGGGCGTTATTGGCGCCTGGGCGTTTTGTCTGTTTCTTGGGAAGTTGTAAAATCGGGGGGTCTCGCGCGGTATTCGCCCAGGTCATTTACT # Right flank : GGCGTGACGGGCCCCGCCGGGCCCGTCACACTCAGCCCCTGGGCGCGGACGCCCTGATCCGCCCCGTCAGGGCGAGCACGGCGGCCGTCACCGCCAGGACGGCCAGTCCGACGAGGCCGCCCAGGCCGCCCGGGTACAGCAGGGAGTTCGTGTCCGCGTCGGCGGCGGCCAGAGTGAGGAAGCCGACCGTGTTGAGGGCGTTGTTGGCCCCGTGGGCGATCACCGCCGGCCACACCGAGCCCGAGGCCAGCCGGAGCCAGCCCATGATCACGCCCGCGACGACGCAGAAGGCCAGAAACAGGGCCACCTGGCCCGCGTCGAACCCGCCGTGCGTGTACTGGATGAAGAGCTGGGGGCTGTGCCACAGGCCCCAGACCACGCCACTGGCCAGCAGTGCGGGCCACACGCCCATCGGGAGGAGGCGGGGCAGGAGGTAGCCCCGCCAGCCGACCTCTTCGCCGAAGGCGAGGACGAGGGTGGGGACGGACATGAGGATCGCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //