Array 1 62850-61018 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGM01000001.1 Moraxella catarrhalis strain COPD_M121 NODE_1_length_347187_cov_15.3711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62849 28 100.0 32 ............................ TTTGTCTGTTAAGCTTTGATTAAGTGTGTTAA 62789 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 62729 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 62669 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 62609 28 100.0 32 ............................ TGATTTCTTCACGACCGCACAGGTCGCTTAGA 62549 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 62489 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 62429 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 62368 28 100.0 32 ............................ CATAAAGTATCATCACATTCACTTGAAATTGA 62308 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 62248 28 100.0 32 ............................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 62188 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 62128 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 62068 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 62008 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 61948 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 61888 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 61827 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 61767 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 61707 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 61647 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 61587 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 61527 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 61467 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 61407 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 61347 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 61287 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 61226 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 61166 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61105 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61045 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGM01000045.1 Moraxella catarrhalis strain COPD_M121 NODE_46_length_224_cov_13.3814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 99 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTC # Right flank : ACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //