Array 1 524151-524826 **** Predicted by CRISPRDetect 2.4 *** >NC_017544.1 Listeria monocytogenes 10403S, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 524151 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 524216 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524280 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524346 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524410 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524473 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524537 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524602 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524666 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524732 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524755] 524798 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2639996-2637978 **** Predicted by CRISPRDetect 2.4 *** >NC_017544.1 Listeria monocytogenes 10403S, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2639995 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2639929 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2639863 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2639797 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2639731 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2639664 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2639598 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2639532 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2639466 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2639400 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2639334 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2639268 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2639202 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2639136 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2639070 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2639004 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2638938 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2638872 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2638806 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2638740 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2638674 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2638607 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2638541 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2638475 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2638409 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2638343 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2638277 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2638211 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2638145 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2638079 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2638013 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //