Array 1 36788-34622 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZF01000017.1 Lactobacillus sp. UMNPBX4 NODE_17_length_38603_cov_45.6437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36787 29 100.0 32 ............................. GAGTGATACATCAATTTGGAAAGCTAAAACAA 36726 29 100.0 32 ............................. ATAAATAACCGCCCCAGCAGAAATATCAATGC 36665 29 100.0 32 ............................. TATGCCTAACCGGTTTAACTCCTCGCTATACT 36604 29 100.0 32 ............................. ACATCGTAAAGAAGTTTTGAACCAAGCAATTG 36543 29 100.0 32 ............................. GATCAAGACATTGCTCAATGCTTAATTGATCA 36482 29 96.6 32 ............................C ATCGGTGACGATGACACGCAATTACCATTATT 36421 29 100.0 32 ............................. AATCTAAATCCTTAGACGGGGTTAGTGTAATT 36360 29 96.6 32 ............................C AATTCAATCACTAATGGACTATTGACACCATA 36299 29 100.0 32 ............................. TCATCAGCTAATTCATTAGGATTCATCTACTA 36238 29 100.0 32 ............................. TTTTATTAGCTCGGTTTTTGCGCTTTTTAGCC 36177 29 96.6 32 ............................C ATTCCATTTAATTTCATCAAAACAATCAAACT 36116 29 100.0 32 ............................. CTTTCAGGCGTTAAGCAAGTTGGATTTATTGA 36055 29 100.0 32 ............................. AACCGTATATCCGTTTTCTTGCAACTGGTCTT 35994 29 100.0 33 ............................. ATCATTAACGGTCATGCTGATATTAGCGGCATT 35932 29 100.0 32 ............................. TCAATATAGATACTAATGAGCATACGTTAACG 35871 29 100.0 32 ............................. ATCGCTGTCATCCTCTTTATTCACCGCAATAA 35810 29 96.6 32 ............................C AAACCTGATTTTCATTTTCACAGTTTAAGGCA 35749 29 100.0 32 ............................. GTTTTGATCCCAAAATTGCGTAAATATTTGAT 35688 29 100.0 32 ............................. AAGAGGGCAGAGTCCAAGTGGCTTTGTTCATA 35627 29 96.6 32 ............................C ATATGTTCATTGCCTTTGATGTCCTTAGGACG 35566 29 100.0 32 ............................. AATTGATGGATCTGGTGCATCTGCAATATATG 35505 29 96.6 32 ............................C TACCCAGCTCACGTTTTGCTAATGTTATGAGG 35444 29 100.0 32 ............................. AGTTGTGGACATGTCAGCAGATGCTAATTTTT 35383 29 96.6 32 C............................ AACAACGGTAACTCCTATAGCTGGAGTGAGTG 35322 29 100.0 32 ............................. AAAATTTGGTTTAAGAATCTTAAGACTAGTGA 35261 29 100.0 32 ............................. AGATTCGAGTGGCTGGTTAAACGCATCCATTA 35200 29 96.6 32 ............................C AAGCTTCATTAGTTCAGCAAGGTGACAAGGCA 35139 29 100.0 32 ............................. AAGAGTAGCGGTCTTTTTATCTGCATTAATTG 35078 29 100.0 32 ............................. TAAATCTGCTTTGATGAATCTATCAGGCGTTA 35017 29 100.0 32 ............................. ACAACTAAATGCTGATTAGCAAGAGGAGTAAA 34956 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 34895 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 34834 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 34773 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 34712 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 34651 29 82.8 0 ...........AC....T......T.A.. | A [34630] ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16350-16926 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZF01000037.1 Lactobacillus sp. UMNPBX4 NODE_37_length_17285_cov_39.2472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16350 28 100.0 33 ............................ TAGTTTTCATAATTAACCCGTCAAGATGAACTG 16411 28 100.0 33 ............................ TCATCAATTACTAAATCACTTATATCATAACTA 16472 28 100.0 33 ............................ CTTGCATCAAGTCTTTATCATCAATCTTGTACC 16533 28 100.0 33 ............................ CTTGTTGTGGCACTGGCTTTTTAAGCTCATTTG 16594 28 100.0 33 ............................ TGCTGTCATAGATCAAGGCATTACTAATGTGGC 16655 28 100.0 33 ............................ CTATACTAGATTGGTAAGAAGCAACGTCAACGC 16716 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 16777 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 16838 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 16898 28 75.0 0 ...........ACA.........A.ATA | C [16920] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTCTGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : GCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATGTGAAGAATTATAAATTCGTAAATTGCAATAATAAATTGAACACTTAAGCTGCTTGATAGATATGATCCAATTCTCTTTCAAAGATTTCATCTGGTGTATGATATGCCAATATTTTTCTTGGTAGCGAATTGCACCAGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //