Array 1 285460-286927 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHR01000002.1 Pseudomonas aeruginosa isolate 94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 285460 28 100.0 32 ............................ TAGTGCGGCGTGCGAGGTTGGATTGGGCATTT 285520 28 100.0 32 ............................ GGAGACGGAGGAGAACTGAACAAATCACTCAA 285580 28 100.0 32 ............................ ACCACGAACGAACAGTTTCTTCAGATTTTTCA 285640 28 100.0 32 ............................ TGAGAAGTTCGGTAGTCCTAGTGCGGCGTGCG 285700 28 100.0 32 ............................ ACGCACGTGCGGAGGCGGGATATGGGCGGCCG 285760 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 285820 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 285880 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 285940 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 286000 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 286060 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 286120 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 286180 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 286240 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 286300 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 286360 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 286420 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 286480 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 286540 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 286600 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 286660 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 286720 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 286780 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 286840 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 286900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 633-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHR01000055.1 Pseudomonas aeruginosa isolate 94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 632 28 100.0 32 ............................ TCGCATTGCGCCTGCGTCATGATGCCCGACTC 572 28 96.4 32 ....................T....... AGTACCAGCGATCTGCGAAACCGGACAACTCG 512 28 100.0 32 ............................ GAGGAGCACGGGACGATAACAAGCGCAAAGGG 452 28 100.0 32 ............................ TGGTGCAGATGGCCGCCGCGCGGGTACACGTT 392 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 332 28 100.0 32 ............................ TCATAGGGCTGTGGCAGGTTGACCACGTCGCT 272 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 212 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 152 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 92 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ATCTGGCGAAGAGCGGGATGATGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59-266 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHR01000075.1 Pseudomonas aeruginosa isolate 94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 119 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 179 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 239 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACATGACAAGGGCAGAGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10489-9140 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHR01000075.1 Pseudomonas aeruginosa isolate 94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10488 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 10428 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 10368 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 10308 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 10248 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 10188 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 10128 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 10068 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 10008 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 9948 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 9888 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 9828 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 9768 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 9708 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 9648 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 9588 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 9528 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 9468 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 9408 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 9348 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 9288 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 9228 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 9167 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //