Array 1 278136-277223 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_OEQB01000001.1 'Megasphaera vaginalis' Bordigoni et al. 2020 strain Marseille-P4857, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                                                                          	Insertion/Deletion
==========	======	======	======	============================	=========================================================================================	==================
    278135	    28	  92.9	    32	...........CG...............	ATATATCCACCCAATCCCGGAAGAGCAACGTG                                                         	
    278075	    28	  92.9	    32	...........CG...............	GCTTCGTTCACCAAAACGTTGCTGTTCAAGGT                                                         	
    278015	    28	  92.9	    32	...........CG...............	GGTAATACTGATCGGCCACGTCCCCGATGCAC                                                         	
    277955	    28	  92.9	    32	...........CG...............	AAATCGTCATCGAGCCGCAGATACTCTTTTAC                                                         	
    277895	    28	 100.0	    32	............................	ACATGATCCGCCACTTACCGCCTCTCATAACT                                                         	
    277835	    28	 100.0	    32	............................	AAAGCGAGTAAGCCGCTGTAGGCGTCCTCGCC                                                         	
    277775	    28	 100.0	    32	............................	GGTAGTGCCAGCACAGATTTGAGCGGCACTGT                                                         	
    277715	    28	 100.0	    32	............................	TTAATCATCATTATAGCCTGTGTGATGATGAT                                                         	
    277655	    28	 100.0	    32	............................	TTACACCCTCTCCATACCGGCCCGGGTCACGA                                                         	
    277595	    28	 100.0	    32	............................	TGCATGCCGCGACTAATCATAGCGACATGTAC                                                         	
    277535	    28	 100.0	    32	............................	AAACATATCGACGAGCATGGCACGTCGTTCTT                                                         	
    277475	    28	 100.0	    32	............................	AACAAAATCAGAGACGGCGCTCCGTCTTCTTT                                                         	
    277415	    28	  82.1	    89	...........CG............GGG	GGATAGCTTACAGTTGCAGGTTTCTTCATTTATCGATATGTAGATGGCAGACTTGGCAACATGTTTTGTGATATAATAAAAAAAGCTTC	
    277298	    28	  85.7	    20	A..TA........C..............	TTAAGCTATTTAATGATTTT                                                                     	Deletion [277251]
    277250	    28	  75.0	     0	..AA.......C...........GCGC.	|                                                                                        	
==========	======	======	======	============================	=========================================================================================	==================
        15	    28	  94.3	    35	GTTCTCTGCCGTATAGGCAGCTTAGAAA	                                                                                         	       

# Left flank :   AAGGAATTAGCGAATTTGCATATAAGGCATGTATTGATACATTACGAAGACTATGTCCATATTACCAAAATACGGCAGGTTCCTGAAAAAATAAAAAAGTACGCCATATATCGCCGGTATCATGAAGAAAGGACAAAAGAAAATAAAGCGAGACGTTTTATGAGTCGCCATCAGATTTCTTATGAAGAAGCCGTCCATATATTTCCTGAAACCGTTGAAGACGTTGCCTATCCTTATATAAGATTGGAGAGCGCAACCAATAAAAGTCGATTTCGCCTCTTTATTGCAAAAGATGACTGTAGTGAACTTGTGAGCAAAGGGTTTGGGTCATATGGATTAGATACGCAATCTTCGCTTCCCGAGTTTTGACCAAAATTTTAGCGTGTTGCCGGGAATGTAGAAAAATAGCCATATAGGGGACTGTGTATCCATTTTGGGGTACAAGAGAATGTTCCTGCTCACATGGCGAATTACGGCAACTAGCGACGTTTTTCTTACAG
# Right flank :  TGATCATGGGTCGGCCGAATTGTTACGTCCCGTGGTTCATTGCCGTGAATGTCAGGGGAAGTTGTTGGTTTGTCGAAATGAATCGGAAAGAGGAGGATTAACGGTTTACGTGGTAAGGTCAGTACGGCGGCATGAATATGTTGTCAGTCGATTATATTTAACAGAACCAAGTACTTGCTGCGTGCGGCAGGTACTTGGTTCTGTTACGCTTTCGCTGTTTGCGGATGTTGTTAACCGATAGTCGGTCAGATTCGGACGAAGCGGGCTGTGTTACCATTACGTGATCGGCAATGGAAAAATATTTCACGTACATTGGAGGAGGAAGGGAATTGATTAAAATATTGTTTGTTTGTCACGGCAATATATGCCGCAGTCCGATGGCGGAGTTCGTGATGAAGGATATTGTTAAAAAGGCAGGTCTTCGAGATTTCTTCCTGATTGAGTCGGCAGCGACAAGTGCGGAGGAGATTGGTAACGGCGTTTATCCGCCGGCTAAGCGA

# Questionable array : NO	 Score: 5.51
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.37, 8:1, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCTCTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   GTTCTCTGCCGCGTAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//