Array 1 997844-1000902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJB010000001.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-CM43 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 997844 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 997905 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 997966 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 998027 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 998088 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 998149 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 998210 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 998271 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 998332 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 998393 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 998454 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 998515 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 998576 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 998637 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 998698 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 998759 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 998820 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 998881 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 998942 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 999003 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 999064 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 999125 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 999186 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [999206] Deletion [999226] 999228 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 999289 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 999350 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 999411 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 999472 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 999533 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 999594 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 999655 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 999716 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 999777 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 999838 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 999899 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 999960 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1000021 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 1000082 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 1000143 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 1000204 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 1000265 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 1000326 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 1000387 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 1000448 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 1000509 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 1000570 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1000631 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1000692 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1000753 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1000814 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1000875 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1017448-1019857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJB010000001.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-CM43 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1017448 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1017509 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1017570 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1017631 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1017692 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1017753 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1017814 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1017875 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1017936 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 1017997 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1018058 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 1018119 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 1018180 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 1018241 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 1018302 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 1018363 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 1018424 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 1018485 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1018546 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 1018607 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 1018668 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 1018729 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 1018790 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 1018851 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 1018912 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 1018973 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 1019035 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 1019096 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 1019157 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 1019218 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 1019279 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 1019340 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 1019401 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 1019462 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 1019523 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 1019584 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 1019645 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 1019706 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1019767 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 1019828 29 100.0 0 ............................. | A [1019855] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //