Array 1 211576-211752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDO010000001.1 Bifidobacterium dentium strain 78T4 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 211576 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 211627 24 100.0 27 ........................ AACAGGGTGGCGAATCCGAGGCACGGA 211678 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 211729 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 97.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGACCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACTATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCGTCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCCTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGTTGCGCGGACATGGCCGCCAGCTTTAAATTTGACCTCATGGGCGCGGTGGTCGCCCTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTGGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 184061-182880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDO010000010.1 Bifidobacterium dentium strain 78T4 Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 184060 36 100.0 36 .................................... CAAACGGCAGACGCTACAGGGTCATCGCCGGCCACC 183988 36 100.0 36 .................................... GTGCTTTTCGCGTCGGTGCACGTTTCCGGCGGAACC 183916 36 100.0 35 .................................... GTGTAGGTGACGGTCGTCGTGGTCACGCTACGTTC 183845 36 100.0 36 .................................... CCGTCGACGGGTTTGCCGATCTGCGCGCGGCGTACG 183773 36 100.0 34 .................................... GCGACCGTGAACGCCACGGCATACTCGGGTGGCG 183703 36 100.0 35 .................................... CCAGACCTGCACTTCGTCGTGAGTGATGGACTGCA 183632 36 100.0 35 .................................... GACGATTTCACCAACGGCCTGCAGAACTACATCCG 183561 36 100.0 36 .................................... ATTTTTAAACTCGTTCGGTATCTTTTACATTCAAAT 183489 36 100.0 39 .................................... GTCACGCCAGGCGACAAGGACAAACGTCCGAAGTTCGAG 183414 36 100.0 34 .................................... TCGACGAGCGGCAGACTGTCCACGTCATTGACGA 183344 36 100.0 37 .................................... CGTCTGGATGACGGACAGTACGGTGCCGATGATGGTG 183271 36 100.0 37 .................................... CCAGGAACGACAACAGTCTCACGGCCGCCCTGCCCGT 183198 36 100.0 36 .................................... AAGCCCCTAGGATTCCACGAATGGCTCCAAGGCCAA 183126 36 100.0 35 .................................... TTACCGTCATGAGGCACGAAAACATGGATTCCATA 183055 36 100.0 103 .................................... ACGTATTTCCCGTTCATGGGCACCCTGAACAAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 182916 36 83.3 0 ...........T.GT........CT.........A. | C [182914] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 16 36 99.0 40 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCGTCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTATAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : CGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGCGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCGTCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGTCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 29282-29105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDO010000002.1 Bifidobacterium dentium strain 78T4 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 29281 24 100.0 27 ........................ CTCAGAGGCACATGCAGGCATCCTACA 29230 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 29179 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 29128 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATTGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //