Array 1 495-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKI01000013.1 Lactobacillus iners LEAF 2052A-d contig00050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 494 29 96.6 32 ............................C AGATACAAAGCGGCGGAAGAAGTAGAGCGAGA 433 29 100.0 32 ............................. CTCCTATCTGCATATGGTACGTTAACTATTGA 372 29 100.0 32 ............................. CATGATCATTTTTGAAGATAAAAAATTACAAG 311 29 100.0 32 ............................. GGTTTCAAAAGAAATGCTAAAAAGCCTACAAG 250 29 100.0 34 ............................. AAGTGATTTCTTCGTTTGCTTTTCTCACGCGATA 187 29 96.6 32 ............................C TAGACCAATTTTAGATAAAAATAAAAAGCCAA 126 29 100.0 33 ............................. CATTTCAAACTGTTCCTTTCTCTCAGCTTTTCA 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 99.2 33 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAACTGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTATGTACGTTTATTGGAGATAAGGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATATGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATATGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : TCGGCTGGCAAGCACGCTATCATATATCAAGCTGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKI01000021.1 Lactobacillus iners LEAF 2052A-d contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 51 29 96.6 33 ............................C GATGGAACTAATCAATAAAAAAAAGCCTGCAAG 113 29 96.6 33 ............................C ACGGAAACTGCCAAAGAAGTGGCGAGCTGGTGG 175 29 100.0 32 ............................. CAATTTTTGGAAAGTGGGGAGTATATAGGCGA 236 29 96.6 31 ............................C GGCTGTTTATTTTTTATTCTTAACTCTTTTA 296 29 100.0 32 ............................. ATTCTCCAGTCTTTTTAAGATATAAAGATTCT 357 29 100.0 33 ............................. AACGCTGTTTTCGTCACTTGTCAATATATTTTG 419 29 100.0 32 ............................. TAATCCATTGTGTGAAGAGTGTCTGAAAAAAC 480 29 100.0 32 ............................. TGCTGAAATCAACACAGATTGGGAACAACGCA 541 29 100.0 32 ............................. CGCCTTCAATTGTTACACCTTGGATTGTTCCT 602 29 100.0 32 ............................. AGCTCTAAACCATAATCTAACAATTTACACAT 663 29 96.6 32 ............................C ATTCATTTTCAAAACTGCCTTAATTTTATAGA 724 29 96.6 32 ............................C CGCTAACCTGTAAAGCCTGCTCGCTATCTTTA 785 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 847 29 82.8 109 .....................AC...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT T [867] 986 29 69.0 0 ...C..T...T.......T..A.A..AAA | T [1003] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 15 29 95.7 38 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : ACATGCGGGGGTGATCCCCGATAAAGAGAATTTTATAGCGTCCTTGTATGG # Right flank : AGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAATATGGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCTAAATTAGTGCTATTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.46, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //