Array 1 107892-106355 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy015 SEQBC45_contig_4_49_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107891 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 107830 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107769 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107708 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107647 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107586 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107525 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107463 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107402 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107341 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107280 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107219 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107158 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107097 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107036 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106933 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106872 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106811 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106750 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106689 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106628 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106567 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106506 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106445 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106384 29 96.6 0 A............................ | A [106357] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124965-124022 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy015 SEQBC45_contig_4_49_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124964 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124903 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124842 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124781 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124720 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124659 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124598 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124537 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124476 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124415 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124354 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124293 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124232 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124171 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124110 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124049 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //