Array 1 432-1523 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQGK01000022.1 Neisseria meningitidis strain M29044 M29044_CHA3757A41_cleaned_ctg_28937, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       432	    36	  97.2	    30	........G...........................	TTCCCATCTTACTCTCCCCTTGCCACTCAA	
       498	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
       564	    36	 100.0	    30	....................................	TTTTCATCGTAACATAGTTGCTTGCGCCAA	
       630	    36	 100.0	    30	....................................	ACAATGTTTCGGCGCAACACATCAGCAGGG	
       696	    36	 100.0	    30	....................................	AAATTTAAAAACTTCAAAATTAAATACAAG	
       762	    36	 100.0	    30	....................................	AAGGGGGGTCAGGGGGGTCGGAAAAAATAC	
       828	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
       894	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
       960	    36	 100.0	    30	....................................	GACGTCAAATCGCGTTACGCCATGGCGCAG	
      1026	    36	 100.0	    30	....................................	AATCGCCTCGAGCCATACGGAATCAAGCTC	
      1092	    36	 100.0	    30	....................................	ATACGAACTCATCCGGAGCCACGCCGAGCC	
      1158	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
      1224	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
      1290	    36	 100.0	    30	....................................	ATGTTTTTGGCGAGATGGTCGTATGTATCG	
      1356	    36	 100.0	    30	....................................	TCCCTTGGGATCTCATGCAATAATTTCCCC	
      1422	    36	 100.0	    30	....................................	CCTGACAGGCTAGGATTTCCGGAAAATAAT	
      1488	    36	  97.2	     0	............T.......................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.7	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   CCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG
# Right flank :  TACCTCAATGGGAAATCCTTATTCTATAAGGGTTTCCCATTTTATTTTGTCTAAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACATCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGATATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTACGCTGGCTTGAAATGAAGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.27   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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