Array 1 25396-27286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDRN010000030.1 Delftia sp. SD018 30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 25396 32 90.6 33 CC.C............................ ACTGCTGGGCGCGCTGGCCCTGGCCGGCTGCAG 25461 32 96.9 37 C............................... ACGCACCGAACAACGGCACACGGTGATCCACGGTGTC 25530 32 93.8 35 TG.............................. ACGCCGTCACTGGACGCCACCACGTCAAAATCACA 25597 32 100.0 35 ................................ ACCCGGGTCGTAACGCCCTGGAAGGTGAACGCCAC 25664 32 100.0 35 ................................ ATCACGCGCACCTACCAGCGCGCGGCGGCCGTGCC 25731 32 100.0 34 ................................ GGCCACGGCCAACCCATCAGCGCGAGGGCAGCAC 25797 32 100.0 33 ................................ TGGAGCCAGCGCACGCAGCGCGTAGCCTCTGCC 25862 32 100.0 34 ................................ GTGGCATCGGTCAGCCGGATGCTCAGCGAGACGC 25928 32 100.0 33 ................................ AGATCACTCTCAGCAAACAAGCCCCCTAAGAGC 25993 32 100.0 36 ................................ CTCACTGACGCCCAAGCGGTCGGCCAGCTCAGCCAG 26061 32 100.0 35 ................................ GACAGTTGACCCAGCGACTGCTGTATCCCAGACTT 26128 32 100.0 33 ................................ ATGGGACATCACTGACAAGACCAAATACGCCGG 26193 32 100.0 35 ................................ GACGCGGACTCGGGCCTGCTGTCGGTCGAAGAGGC 26260 32 96.9 35 .......................C........ AGCCCACTGCGTCCGTTTGCCGCGTAGCTGTCCCC 26327 32 96.9 34 ..........T..................... AAGCGTGGCGCAGCGGGCCTCCAGCTCCATCAGC 26393 32 100.0 34 ................................ AGGTCCATGCTGCCTCCCATGTGGTCAGGTCATG 26459 32 100.0 34 ................................ TATTCCGAAGCCGAGCGCGCAGAGATTCTGCAGC 26525 32 100.0 35 ................................ AGCTCTACATCCCGCTTGCCTGCCTCGGTCTTGGG 26592 32 100.0 34 ................................ GGCTTCACGGAGCGCCACAGGGTCACCGCACGCC 26658 32 100.0 33 ................................ AACGTACTCAAGATCCTCGACTTGTGCGAGATG 26723 32 100.0 35 ................................ GGATGCCATCCACATTCGCGCGGCGCTGCTACCTG 26790 32 100.0 35 ................................ CGCGCGAGCCTTCTTGCAAGCCGCGTCGAACTCTG 26857 32 96.9 35 .................T.............. CCAGGGGTGGCGGCTTAGGCCGTTGGCGTCATGCG 26924 32 100.0 35 ................................ GATCCCGAGCGCGCCGGCCAGCAGGACGGCATCAC 26991 32 93.8 35 ..G.......A..................... ATTGCGCGGCTCCTAATGTGTGAGTCCTATCGAAC 27058 32 96.9 33 .................T.............. GACGCACTGCTCAACTACGCGGGCTCCGTGCAC 27123 32 87.5 100 ..T......TA.T................... GACCCTGGCACCGGTGCCTACCTCAACGACATCACCTTGTGCCCCATGTGGGCGTGGATTGAGACATCTCGCACCATCTGCACGAGGTCTATGAGATCTG 27255 32 75.0 0 T.G.......A.A.....A.......G.T.T. | ========== ====== ====== ====== ================================ ==================================================================================================== ================== 28 32 97.3 37 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CAGCCCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAGTACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCACCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCCGCGGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTA # Right flank : CCCCCGTTTGCACTGCAGCCTCGTGTGGTGAAGCATGGGGAACTTGGGAGTTTGTGGCGGCCATGCCCCATCCCCGAATGTCGCTCGGCCCCCCTTCCAGGGGAAAACACCGGGGCGCCCGCGCCGCAAATGCATAGGTCTGCGCATGAATCGTTCAGGCCCGGCGCCATCCCTGCGGAGAATTCATGAAAGCAGCCTGCAGGGCATCGCAACCACGGGACTGCATGCGCCCGCAAGAACAACAAGCACAAGAAAAAGAAAAAGGGCTGGAGACCGGTTTCAAGCTGCTCCCCATGGCAGCCGTGCTGCGGCCATGGGGATTTTCGCCAATCGGCAATGTCAAGGAGGAGAGGGAGATGAATAAACGCATGATCCGCAGCGCTGGCCTGGCCGCGCTGGCGCTGGGCACGGCCCTGGCGGCCCAGGCCCAGAGTTCGGTCACGCTCTATGGGCGTGTGGTCGCGGGGGTGGACTACCAGAGCAATGTGTACGACCCGGCC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37991-41110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDRN010000030.1 Delftia sp. SD018 30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 37991 32 100.0 33 ................................ GAAACGTTGCCCTCAAACCAGACGGTTTCGCCG 38056 32 100.0 34 ................................ AAGGAAACGCTGGGCATTGCCAGCCCGAGCCGCG 38122 32 100.0 32 ................................ AAATGCCGATGCCAACCAGGGCTACCAATAAG 38186 32 100.0 33 ................................ TTTTTCAGGGCGACGGATTGCTGCCCGCTTGGC 38251 32 100.0 35 ................................ AGCAACATGCTTGCGAACATGCAGCTAAAGATAAT 38318 32 100.0 33 ................................ AACCTGATCATCCCAAGAAGCCGCCTTAGGAAC 38383 32 100.0 34 ................................ CCCAGGCATCAGTGCCCAGCACCTGCTTGACGGC 38449 32 100.0 35 ................................ GGCAAGGGGCGCACGGAGATCGAGCGCATGACGCT 38516 32 100.0 33 ................................ AGTCTGGCCAGGCCCCGCTGACGGTGCTCCTGC 38581 32 100.0 34 ................................ CTGCTCAATGCGGTAGTCCTCTGGACGCCCTGGA 38647 32 100.0 35 ................................ GGTCGTCACGTCCGCAGCAAGGGTGTGTTCAAGGG 38714 32 100.0 34 ................................ GATACCAGGCCTGCCCAGCATGGGCGGCAGCTAT 38780 32 100.0 32 ................................ AATGCCATCGCGATCAGTTGAGGACTGGCCAG 38844 32 100.0 35 ................................ TTCACCGCCGGCGGTGACCTGGTGGATGGGCTGAT 38911 32 100.0 34 ................................ CAGTCGCCGATCCGCGGTGCCGGCCTGGTGCGAA 38977 32 100.0 33 ................................ GCCCTCGCATTTATCGCCCTTGCACTCGCCGTC 39042 32 100.0 33 ................................ ATGATTCCAATACAGCCGTCCCGGTGCAGCACG 39107 32 100.0 33 ................................ AACGTCCGAGATAGATACTGCTTTACCAGCTTT 39172 32 100.0 35 ................................ TATAACGCTAGCAACAGCTACGACTTGGGGCGTGG 39239 32 100.0 34 ................................ TTGTCTTGGGCTTGGAAGTGATCCAGCAACGGCT 39305 32 100.0 33 ................................ ACGCCCAGGGTCTTCTGGGCCACCTGCAGGGCC 39370 32 100.0 33 ................................ CCGCTGATCCCGCAAAGGAGGCCACCCCATGCC 39435 32 100.0 33 ................................ ACGACTCTCGCAAAAACCTCGAAGTCCATCTTC 39500 32 100.0 34 ................................ GCATCGGCCTCGACAGCGACAACGACGTGTGGGC 39566 32 100.0 32 ................................ ATCGAATTCGGCGGCAGGTGCTGGTGCAGCGG 39630 32 100.0 34 ................................ AGCCCCACCATCTCGGCGGCGCCTTTCACGACAT 39696 32 100.0 33 ................................ CATTTCCCATGCGGAATGCAGCGCCTCGCTCTG 39761 32 100.0 33 ................................ ATGCAATCTTGCCAGTCCAAGCGCTCGATGTAC 39826 32 100.0 34 ................................ ACGATCATGGGTGAGACGTCCTGCGCCCTGGACT 39892 32 100.0 33 ................................ ATCACCCTCCTCATCAGCCTGCATCTGGTGGTG 39957 32 100.0 34 ................................ AAGGTCAGGCCGTTGTCTATTCGGAACTGTCGCG 40023 32 100.0 34 ................................ ACGAACATCAGCACGGGCCGCACATCCGCGCCGC 40089 32 100.0 34 ................................ TTTCGCTCGAACACACGGGGCACGTTCGCAGTCG 40155 32 100.0 33 ................................ AGCGACTTGGTGGGCATCACGCAAAGCGCCGTC 40220 32 100.0 35 ................................ AGCATCCGACCTCCCGCATCACATCGAGCAGCGCC 40287 32 100.0 34 ................................ GACCGGGACACCGGCAAGCTGGGCAAGGAGCTGT 40353 32 100.0 33 ................................ CAACCATTCCCGAAATCAAAATCCATAATCCAG 40418 32 100.0 34 ................................ ATCCGCCGTGCCCAGGACGACACGGGCTATAGCC 40484 32 100.0 33 ................................ CGCTGCTCCAGCATCGGCAAGCTGATGACCGCG 40549 32 96.9 33 .............T.................. AAGCTCTCAGGAATGCCTTTGAGCGAATGGCTC 40614 32 96.9 34 ...........................A.... GAGTTCTCGATAGGGCAGGGGGGCTATCAGCCCA 40680 32 96.9 35 ....T........................... AGGTCATCGAACACCATGCCGGTGACGTTGATGTC 40747 32 100.0 35 ................................ ATCAATCGTGGGCGCAACCCTGAACTGGACACGCA 40814 32 100.0 35 ................................ GGCAAGTACGCCGGGATGCCCTACGGCACGCACGC 40881 32 100.0 34 ................................ ATTACTGTCGCTTTGGCCTCGTTGGGCTGGACTG 40947 32 100.0 34 ................................ ATCACTGTCGCTTTGGCCTCGTTGGGCTGGACTG 41013 32 100.0 34 ................................ TGCGAGAGGTCGCGGATCGTGCTGTACAGGTAGT 41079 32 96.9 0 ...........................T.... | ========== ====== ====== ====== ================================ =================================== ================== 48 32 99.7 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGTGTCAGCGGTTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAATCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCAGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCGATCCTGATCAACCGCATGAAGGTGGCGGGCAGCTGATTGGCTTGCGGCTGCGCATGCTGATGAAGAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGACACCGCGCGCCCCGGCTGCAGTTGGCCGCACCAGCGCGCGTTCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGACGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGTATCACCGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCGGTGGTGCGGCTGGGTTATAAGCATGCC # Right flank : CATGGCCATCAAGCGCGAAATGACGGGTTCGGGCAATGGCTGGCAGCCCGATCCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACACGACTGATTCAAATTGTCAAATTTGTTCCTGAATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTTTTCGCGGTGATCGTGGTTTGCGTATGCGTGGCGGCCTTCGGCTGGATGAAGTTGCGTGACCAGGGCGAGCAGTTGCGCGTGCTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAACGCGTCGGCACGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //