Array 1 323007-322551 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000014.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 323006 29 100.0 32 ............................. GCCTCGGGCGGGTAGTGCGCGCGCTGAGGGTC 322945 29 100.0 32 ............................. GACTACACCCTGCCCGTGTTGGGCATGGCGTA 322884 29 96.6 32 ........T.................... GTGTGGAGCTGACGGCGGAGGTACTCGCTGCG 322823 29 93.1 32 ...........A.....A........... ACGTACATGGAGCTGTTCGAGGAGTACAAGGA 322762 29 93.1 32 ...........C.............C... GACGTCGACAAGTGCTACTGGCGCCTGGTGGA 322701 29 82.8 32 ...T..T...T..A......C........ TCCTCGGTGGTCAGCTCCTCGCTGCCCGAGTC 322640 29 89.7 32 A.......T...C................ TCAGGGAGTCCTTGAAGGGTCTCCAGGAGAAA 322579 29 86.2 0 .......A....C...T......A..... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 92.7 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GGGGTGGGGGGGCGGGTAAGGCCGCAGGTCATGGAG # Right flank : AAGCGGTCGGCCGCGTGCCCCGCCTCGGCGTGCTCCGCTCCGAGGCGCCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCTCCAGGGAGTTCGTCCACCCGAGAGGAAGCGCCGCGTGGGACTGTCACGGAAGTACGGAACCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCTGCCGTGGCCTTCTCCGAGGAGTTGACGAGAGGGAAGGTGCTCACCCGGCCGCTCGCCGGGGAGGATGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCTTACTGTCCCCACCTCGGCGCGCATCTGGGGCTCGGCAGGGTCGACGGGGAGGACCTGGTCTGTCCCTTTCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACGGCGCCGCCCCGGTCGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 559600-559812 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000019.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 559600 29 100.0 32 ............................. ACGGCCGAGAACCGGGCGCTGGACTGGCTGAT 559661 29 100.0 32 ............................. AACGGGACCCTCCAGTACCGGCTTCTGAACAT 559722 29 96.6 32 ...T......................... CCGATGCGCACGTGCTCCACGACGGGAGTGCC 559783 29 75.9 0 ............CCC......CAAC.... | A [559810] ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCGGCACCCACCCCCGCGTCGTCCCCGCCCACCACAGAACCCCTCCCCGTAGCCCGGTCTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGGTTGGCGTCTTGGGGGCGAGGGGGTTGGGGGTGGCGTGGGCGGCTGGCACGGGGGTGGGGCTTCGGGGGGTGTGGGCGGGGGTGTTCGGGTGCGTTCGGGTGGGGCGCCGAGTGGTTCGGGGGAGGAGGGGGCGTGGCGGGGTTGGAGTTGACGCGGGGCGTTGTCCTGTTCCGATCCGCAGGAGCCACTGGGTGAGCCAAGTCGGTAGTTGGGGCTTCGTTTCGCTTGGGTGCGACGTTGCTGGGGGCGCGCTTGAGAAGGCGGAGTCAGGTGGGGGGAACTGGGGGAGGATGGGCGGGGGCTGATAAATCGGGAGGGGGTGCTATGCCGCTTTCATGCGAAAGGTCGCAATCGGCGAAGCTTGCAGGAACGGGTGGCGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CCGGCCTCCCTCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAACCCCACCCTTCACAGCAGCCCCCTCCGCGCCCGCGAAAAACCCCACAACCCGCTCCGCACACCCCCCACCAGCCATCCCTCCATGTTCCCCGTCCCCCACCACCAACAACGACCCCCCGGTTCGCGCCCGCATCGCCCGGGCCCAGGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGCGCGGCGTTCGCCGTAGGCCGACCACTGTTCCGTGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGCGGTGCCTGCGAAAGGGGCGACCAGGGGCGGTGCGGCGGCGCGGGGTTTGCCGTCGCCGTCCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 210302-210452 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000010.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 210302 24 100.0 39 ........................ TCTTTGACCGGCAGGTCGCATCGGACCGGCGCACAACCC 210365 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 210429 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : ACCTTCTTCCTCGGCCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCTTCTGGGTAATCGCCGCCCTCGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGGACCAGGCCATCGACCAGGTGGCCTCAAGCGCCGGCCAGGCTCAGTGGCCTCAAACGCCGGCCAGGCTCAGTGGCCTCAAACGCCGGCCAGGCTACCGA # Right flank : AAACCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGGATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 508365-508578 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000010.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 508365 24 100.0 39 ........................ CTCGGTAACCGGCACAGGAAGACCACCCCCGCCGAATCC 508428 24 100.0 40 ........................ TCTTTGACCAGCACGGTCACGACGAACCGCACCCCCAAAT 508492 24 95.8 39 ...............C........ TCCTTGACCGGCACGGTCACCACAGACCGCACCCCAAAA 508555 24 95.8 0 ...............C........ | ========== ====== ====== ====== ======================== ======================================== ================== 4 24 97.9 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : ATATGGAGCTGATCACATCTATTGCCACGGAACGCCTCCGGCGCGGGCCCGTCGCGCCGACACGCCGTGAAGGGGCACGGGTTCCACCCGGGCGGACGCGCCTCCCCCACCGACTGGGCCCGCCTCAAGCGCCGGCAGGGCTGTGAGGGCTTGGCGGCGTCTTCTGCCGCGGGCCAGAGGTGGCCTCAAGCGCCGGCCGGGCTGGAATTTGGCTGGGCTCCGTCCTTCGACCGCAGCTCAGGGATGGCCTCAAACGCCGGCCGGGCTGGAGTTTGGCCCGGCTCCGTCCTTCGACCACAGCTCAGAGATGGCCTCAAACGCCGGCCGGGCTGGAGTTTGGCTGGGCTGACTTTGGCCGGGAGTGGGCCGGGTGGTGTGGTTCGGTGGCGCGCCTGGAGAACAGAAGGGCCCCGGTGGGCTGGGCCGTCGGGGTCCTTCGGTCGTTCGGTGGGGCTGTTGTTGTGAGGCGGGATGTCGGGGGGTGGGCCCCACACCCACTC # Right flank : ACGCCAGGGCGGGCGGGTTGTCCACGCACACCCCCCACGTTGAGCGGAGTTTCCCGCCTCCCCGCTCGCCAGGGCGACCCCGTCGCCCTACTCTCCGAAGGAGCGGTCAAGCGCGGCGAAGGGTGACACGGTGCGGGCGGACCTGATCCTGCCGATCCTGGTGCTGGCAGCCGCACTGACCGCCGCCGTGTACACGTACCGCCGGCGCAGACGCCGGGTCAGCACCCGCACCACCCCGGCGGGGACCGAGATATGGGGAGCGGGCGGCGACACCCGCACCCCGGTGCTCTCCCCTGCGGAGGCCCTGGAGCAGGCGGAGGACGCGATCCGGATCAGGGCGGCCCAGGTGGCGGCCGCCTCCCCCGACGCCCCGCCGCAGGCCCTGATCGCCGCCGAGGCGGCCCTGACGACGGCCCGCACGGAACTGGCGGAGGCCCGCCGCCAGTGGGCCAAGGGCGAGAACCCGGCGGCCGTACGCGAGCACAGCGCGCGGGCCGACG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : CAGCCCGGCCGGCGCCTGAGGCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 545543-545330 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000010.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 545542 24 95.8 40 G....................... TTCTTTTCGGGGGGCGGGCCGTTCCCCGGTCCCGGTGGGG 545478 24 100.0 38 ........................ GTTTTGGCCGGGGTTCGTTGTGCCGTGCCGGTCACTGA 545416 24 100.0 38 ........................ GTTTTGGGCGGGGTTCGTTGTGCGGTGCCGGTCACTGA 545354 24 91.7 0 ..........G.....T....... | C [545332] ========== ====== ====== ====== ======================== ======================================== ================== 4 24 96.9 39 TGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CCTGGGAGGCGGCGCACCGGGCGGCGCGAGGAAAGGAGCCCTCCCCATGGCACTCGGCGTACAGGAGCGCGAGGAATTCCTCGCCGGCCGGCATGTGGCCGCCCTCGCGGTGGAGCGGGGGGACGGGCGGGCGCCGCTGACGGTGCCCCTCTGGTACTGGTACGTGCCCGGTGGGGAGGTCCGGGTGATCACGGGGGCCGACTCCGTCAAGGCCCGGTTCATCTCGGCCGCGGGGCGGTTCAGTCTGCTGGTGCAGCAGACGGCGCCCACGTATCTGTACGTCAGTGTGGACGGGCCTGTCGTGTCGGCCACGCCGACCACCGTGACCGACATGGTCACCGAGGCGTCGCGGTATCTCGACCCCGAGGGGGTCGGTGACTACGTGTCCGGGAGTGGGGTCACCGAGAGCGACTCGGCCGGGCTGCTCACTCTGGCCATGCGGCCCGAGCACTGGCTTTCCGCCGATCTCGGCTGGGGGTAGCGGGGCCGGGCCGCAGCCG # Right flank : TGTCGGGCGGCTCAGGGGTTCAGGGGGTGGCCGGTGGTGGCGTCGACGTGGGTGGGGACGGGGTCGTGGTGGGTGCCGACGGTGGGGGTGCCGGTGGGTTCGAAGAGGAGGATGGTGGCGCCGGTGGGGGCGTGGGGCTTGTGTGCGGTGCCTCGGGGGACGGTGAAGACGGAGCCCTGGGGGAGGTGGACGGTGCGTTCTCCGGCGGGCTCGCGCAGGGAGATGCGGAGGTCGCCGGTGAGGACGAGGAAGAACTCGTCGGTGTCGTCGTGGGCGTGCCAGAGGTGTTCGCCCTCGACCTTGGCGACGCGGACGTCGTAGTCGTTGACGCGGGCGACGATGCGGGGGCTCCGCAGGGCGTCGAAGGAGGCCAGGGCCTGGGCGAGGGCGACGGGGTCGTTGCTCATGGGGTCATCCTGGGGCGTTCCGCCGGGGCGTCGTGAGTGCTAGGAATCGCACATGGCGAAAGAATCCTCGCAGGAGCGGCAAGGGGCGGAGCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 460134-460647 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000016.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 460134 28 100.0 33 ............................ GTCGTCATATGGCCCATCGCCTTGCAGGCCGCC 460195 28 100.0 33 ............................ GGCCCCCTGAGACACGAGGCCGACGCCTCGCCC 460256 28 100.0 33 ............................ GTGGTCCGTGTCGGGGGGTAGCAGCTCCACCCG 460317 28 100.0 33 ............................ GGAGGCTTTCGGGAGTCTCGGCACCCGCCTGGA 460378 28 96.4 33 .C.......................... GCCGACCACGATCGGGGGCAGGCCGAGCGAGCG 460439 27 92.9 33 .....................-..C... GAGGTTGCCACCGTCTTTGTGTTGGCCCACAGC 460499 28 96.4 33 ...........................T GGTCGCCACCCGCGACGCCAAGCGCATCGTCAC 460560 27 82.1 33 ....-............A....C.GC.. GTACGGCTTGCTCAGCGGGTGACCGGCCTTCTC 460620 28 78.6 0 ....C.................G.GGTG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.0 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : GACACCGACGCAGACATCACCCGAGCCGTCGAAGCGGGCGCCACGGGCTACCTGCTGAAAGCCGAACGCCCCGAAGAACTCTTCACCGCCATCAGGGCTGCGGCTTCGGGGCGTACGGCGCTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGCTGACCCCGAGGGAGCGGGATATTTTGCGGCACTTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGCGGGTGGCGGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGTTGAGAGAGGGGGTGGTGATGAGTAAAGGGATGGCAAAGGCTGTCTGAAGGTGCAGGTGGGGAAGG # Right flank : GGTCCGTAGGCGAAGGCGTCCTCGGCCTCCATGCCGGAGTGGTCCTCGCGGGTCAGCCCTGTCAAGGGCGTGACCCTGGGTCGCCGACTGGACCACCCACATCAGGGTGCCCCGGGACCGAAGAAGACGACCACGTCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGCTGAGGCCAAGGAGAAGGTCGCCAAGGTCGGCGACGCCATCACCCTCAAGGGCTTCGACGGCGAGAAGGTCGAGGTCAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 338281-338071 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLX01000003.1 Streptomyces albidoflavus strain FXJ8.031 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 338280 28 92.9 33 .T..........C............... CCACAATGCGGCGATCGACGCCGCCAAGCAGCA 338219 27 92.9 33 .....-......C............... CCGGCCGTCTGGGCCCCGGCGCCAGGTCGGGCC 338159 28 100.0 33 ............................ CCCGGAGCAGTGCGCGAGGAGCGCGGCGGCTTC 338098 28 89.3 0 .T.........A..........C..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 CCGCTCCCCGCGAGTGCGGGGGTGAGCC # Left flank : GTCTCCACGCGGGGGCCACGAGCAAGGCTCAGGCTCACAGGGCCGGGCCGCTGGATGAAGCGTCGGCTGTGACAGGGCCGCGCTCCGGGTTGCTTTGTGGAGGTGGCGACTTGGCTGCGACGAACTCTCTGCCCCGGCTAGCTTCTTCATGGGCGGTGCTTGGGGGCAGCTGGGGGAGGGCCCTGCTGTCAGCGGGCTTGGCCTGTCGGGTGCTCTTCTCGACTCCGCTTCGGGGTTGGCTGGGCAGATCGCCTTTGCGGAGACGGGTCGCGCGGCCACGATCGGGACCATCCCCAGCGCCCAAGGTAGGCAGGCTCAGGCAGTGGCGCCGGGGCTTGGTGCTTCTGCCGGCCGATGACCGGGATGGCTATGAATGCAGTGCTCTGCGGCGAAAGCAAGGCGGCGGGGGAGGGATGCGGGCGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACTTGCCGAGGTGAAGATGCAGGTCAGGGAGA # Right flank : TCCCGGGCTGCAACGCACTGGCCATGAGGAGCCCGCGCCCTTGAGCCCCGCAGAGCCATGGTCGTATCCCTGCGATGAGAAGGAGCCGCATCCTCGACCGACCTAAGCGTCGATCGGCTAGGAAGAGGCGAACTGGGCGCCACCGGAGAGGACTTCCGCAAAACGTGTCGGGGGCCTTCACTCCACAGCGCCCCTGCTCACCGACCGTATGCCCAAGGCGCACGACGTGGCCCGCCCACGAGCCCGTCAGGCTGTCCTCGGCCCCCCGCGCGCCCCAGTCAGGAGCGCCCACCCACCGCTAGCCCCGCCCCCGCCTCCCCGGCAAGCGGTCACGCAACCCCCGCAAACGGCTCTGCCACGTGCTCGCGGCAGGCAGCGCCCCCGCACCCGCACCCGCAAGCTCCCCTCCCCGGTCCTGCCAAGCCGGGAGCATGCCCCCGAGGCGAGCCCAGGCAAGCCCAGGCGAGGCCCACCGGCCGCCCCTCTCGCCCCGCCACAAG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGAGTGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //