Array 1 171375-170822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCA010000002.1 Clostridium botulinum strain KM75-1-IsvE 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 171374 29 96.6 36 .....A....................... AATATATCTGCAATCATGTTATACATAGAATTATCC 171309 29 100.0 37 ............................. GCAATATTATCACCTCATAGAAATTATTAACATTATA 171243 29 100.0 36 ............................. AGTATTGTCCTCGTGAAAGAAAACTGGTATATCCAA 171178 29 100.0 36 ............................. TATTTCATTATTGTTAGTCCAATTAACCTTGTCGTC 171113 29 100.0 37 ............................. CTTCTTATCTTCGCTAGAATCATCTAATGCTTTTAAT 171047 29 100.0 37 ............................. TTTTCTATCCCCTTATTTTTTCGATTTTAAGTATTAT 170981 29 100.0 36 ............................. TTATGATCGCACAACTAAGATATATGTTTAATACTG 170916 29 100.0 37 ............................. ATGTTACTATTCATATAATATAACTATAATACTTATT 170850 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 37 ATTCACATACTACATAGTAGATTTATAAC # Left flank : GCTTAAATTCTTATAATTTAGGAAAACATAGATTTGTAGCTTATGCAACTAATGGAATAAAAAATAATCTCAATGATCTTATAAAAAGATCTAAAAATAGAGATAACTCAGAAGGATCATCAGCTCTTACACTAACAGATAATCTTGAACATACACTACCTTCAAATAATGAGAACTTAGAAGAGATGCTTTGTAATCAATGTGATTTAAAAATATTAAAAACAGCTATTAAAAATTTAACAGAAGAGGAACAAGAATTAATAGATTTCATTTTCTTTAAAAATAATACTGTTAGACTTTACTCTAATTTAAAAAATTTGTGCTATTCCACTGCTGCTAAAAGAAAGATTGTTGCTTTAAGAAAAATTGGTAGAATTATTGCTAGTTTTAATGAGGTATATGTAAATTAACCCCAAAGGTAAATATGTACCTTTGGAGTTAATTATTTATATATTTAAATTGTAATTATACTATATCTTTATTAATTTCATTGCTATTTC # Right flank : CCCAATAATAAAGTTCGTAATGGAGCCATTTACAGCTATTTCTTAGAGCATATTTTGCAGTAAACCTCAATTAATGTATTTTAAGTTTATTATAAAATATACTCTAACATCCTATATATACTATGTTTACAATGTTTTATTTTCAAATATCATTTACTGCAATTTTAAAAACTACTATTCTTAGTATGCCAGGCGGTAACTTAACACCTGGGCTTACCCTTAGTGAGTAGTAATAGTGTATTGTTGGTAAATCCTAATACATAAAAGTCTATTCTCTCACCCTTCGGTTTATATGCTATTACATACCTATTTTTTAATAGACTGAATCAACCGATTAATTTCTTTATTTTATAAATTCCTTACTTTTAGATATATTTTGACTTGCATTATAATCTGCATTAGCTTTAAAGCCACAATTTTTACATATAAATTTAACTTGTGTTTTCCTATTTTCCTTATCTACATAATTACATTTACTACAAGTTTGAGATGTATATGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACATACTACATAGTAGATTTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 498-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCA010000183.1 Clostridium botulinum strain KM75-1-IsvE 184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 497 30 100.0 35 .............................. GTATGTTTACATTTGTATAGTTGCTTTTCATCAAA 432 30 100.0 36 .............................. TTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAAT 366 30 100.0 35 .............................. GTATCTTCTGGGAATAAATTAGGTATTTACAACCA 301 30 90.0 0 AT.............A.............. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GCTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTAAATGAATTATCCATTTATAGGTAATTAATTTAATTAAATA # Right flank : TCAGCATGTAGAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTGTAATAAATACTAGCTATTTTAGATAATATTTAAAATAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCTTCCCTTAAAAATTTAGAAAGACCAACTGTATATTTATCTATATTATTCGTAAATCTTTCATCATTAACATAAAGTTCCCCAAGACCCCTAAATATTTCAGGGGTACAATCATAAAAGTTTTTTGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //