Array 1 597092-595763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRYK010000001.1 Listeria monocytogenes strain UNITE_58 NODE_1_length_647080_cov_10.991391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 597091 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 597025 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 596960 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 596896 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 596830 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [596821] 596762 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 596697 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 596632 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 596566 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 596502 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 596437 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 596372 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 596307 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 596244 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 596181 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 596115 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 596052 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 595987 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 595921 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 595856 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 595792 29 93.1 0 .......................C....C | A [595767] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 390991-393605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRYK010000003.1 Listeria monocytogenes strain UNITE_58 NODE_3_length_398983_cov_11.958925, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 390991 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 391057 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 391123 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 391189 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 391255 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 391321 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 391387 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 391453 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 391519 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 391585 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 391651 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 391717 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 391783 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 391850 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 391916 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 391982 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 392048 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 392114 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 392180 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 392246 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 392312 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 392378 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 392444 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 392510 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 392576 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 392642 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 392708 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 392774 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 392840 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 392906 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 392972 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 393038 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 393104 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 393170 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 393236 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 393302 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 393369 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 393435 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 393501 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 393567 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [393592,393598,393601] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //