Array 1 186769-183808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCG010000003.1 Salmonella enterica strain F2-6 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186768 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186707 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186646 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 186585 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186524 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 186463 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 186402 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 186341 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 186280 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 186219 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 186158 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 186097 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 186036 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185975 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185914 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185853 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185792 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185731 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185670 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 185609 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 185548 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 185487 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 185425 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 185364 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 185303 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 185242 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 185181 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 185120 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 185059 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184998 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184937 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184876 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184815 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184754 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184693 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184632 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 184571 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 184509 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 184448 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 184387 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 184326 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 184265 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 184204 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 184143 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 184082 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 184021 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183959 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183898 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183837 29 96.6 0 ............T................ | A [183810] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204401-203028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCG010000003.1 Salmonella enterica strain F2-6 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204400 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 204339 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 204278 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 204217 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 204156 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 204095 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 204033 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203972 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203911 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203850 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203789 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203728 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203667 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 203605 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 203544 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 203483 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 203421 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 203360 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 203299 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 203238 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 203177 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 203116 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203055 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //