Array 1 119406-117206 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRB01000006.1 Campylobacter concisus strain P16UCO-S1 NODE_6_length_119433_cov_36.5859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 119405 30 100.0 39 .............................. TTCTTTATCGTCTGACGATTTTCGAGTTTTACAATTTTC 119336 30 100.0 37 .............................. TAATGTAAATTTTTTTAACATAAGCCTATGAAAACAA 119269 30 100.0 35 .............................. GAAAGCGAGCAGTATCACAGCCTAAAAGAGAGAAA 119204 30 100.0 37 .............................. ACGAAAAAATCGTAATTGAATATATCAATAATCTAGC 119137 30 100.0 39 .............................. TTCTTTATCGTCTGACGATTTTCGAGTTTTACAATTTTC 119068 30 100.0 38 .............................. ATTAAACTTCGATATATTCTTATTAAAGCTAAACTTGC 119000 30 100.0 34 .............................. TATAAATAATCTTCAAGATATAAAAAATCTTTAA 118936 30 100.0 35 .............................. ATTAAGCTAATCAAGCGCAATAAATTAAACTTAAT 118871 30 100.0 36 .............................. ACTAAAACTAAAAGTGAGCTTTTAGACGTAATGGCT 118805 30 100.0 36 .............................. ATTGCATTTAAATTAACGCTAGTTGATTTTTATCGC 118739 30 100.0 36 .............................. GAGAGTTTAGCACTCTCAACAATTTGATTTAACTTT 118673 30 100.0 38 .............................. ACAGCGAAGAATACGCCATAAGCAACTAGAACAGCACC 118605 30 100.0 33 .............................. AATTAATGATGATACTATATTTGATGTAGAACA 118542 30 100.0 34 .............................. TATTATGTTAATAATAGCAAAGCAACTAAAGAGA 118478 30 100.0 36 .............................. ATTCGTCTAAAGTTTTAAACAATTCTAACTTTTCTA 118412 30 100.0 34 .............................. TATTATGTTAATAATAGCAAAGCAACTAAAGAGA 118348 30 100.0 34 .............................. AATGCAATTTAATCATTTTCTATAATGCAATTAA 118284 30 100.0 35 .............................. GTTTGAGTGCAAGGCTTTTATCTCATCATCTTCTA 118219 30 100.0 36 .............................. GCACAGTGATAGTGTCGCCGTCAGATATTTTTATGA 118153 30 100.0 38 .............................. GCCCTTTCCAAATTTCAAAAAATGCGTCAAGTATTATG 118085 30 96.7 35 ..........G................... ACACCTGCGAGGCTAGCAAAATATTCTTTGCTTTT 118020 30 100.0 33 .............................. TCGGTCTTTGCTACTTGTTCTTTGCTTAGCCCT 117957 30 100.0 36 .............................. TACAGTGTATCGAAACACACTATACCGCCCTCATAT 117891 30 100.0 35 .............................. TTGTGGCTACTCCCCTCTTTGCCTCTTCAGCCAAA 117826 30 100.0 34 .............................. TTCTGTATTCCTCTCTATCAAAATCCCAAGTATC 117762 30 100.0 36 .............................. AATGTCGCCCTGATTTTTATAATGAGAAAATGGGTG 117696 30 100.0 38 .............................. TATAAATCTGTAAAATAATCATTTACAGATACTTGATA 117628 30 100.0 35 .............................. ATGATGGAGAGGGTCATTGGCTTGATCCTATTACG 117563 30 100.0 37 .............................. AAAACAACCTTTTGCTCTACTTCATCGGTAAAGCCAG 117496 30 100.0 34 .............................. TTGGTTCTCGATGTTTTAGGGGTATTGCTTTAGA 117432 30 100.0 37 .............................. GCCTTATACATCTCCTCCGCCCAGTCTAGCCATATAT 117365 30 100.0 34 .............................. TTTGCAACCTAGAAGGGCAAGACTGGGAGAATTT 117301 30 100.0 36 .............................. CATATATTGGCTTTAACTCTACAAAGACAATCCCTA 117235 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : TCGTAATTGAATATATCAATAATCTAG # Right flank : ATATGTTTTCAACTTCATTTTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGATAAGCAATACTTTAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 8679-11276 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRB01000017.1 Campylobacter concisus strain P16UCO-S1 NODE_17_length_11307_cov_31.1786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8679 30 100.0 34 .............................. GCAAGCTCGTCATCAAAATCGTTCTCTTCTAACT 8743 30 100.0 37 .............................. TCAAAGTGCAAATTTTGATGAAATAAAAAATATTGAC 8810 30 100.0 37 .............................. GTTGAAAAATTAAATCAAATTGTAGATAACGCAAAGT 8877 30 100.0 37 .............................. GCATCGCCATAAAGCTTTCTCTTTTTTGGTATATATG 8944 30 100.0 36 .............................. ATGAAGACCTAGCAGAGTATAAGTTTTTGGGACTAA 9010 30 100.0 37 .............................. TTGGGATGAAGTCGTTGGTAGTGATTGTCGCAGGGAT 9077 30 100.0 33 .............................. TGACCCAGCTGGCTCGTTTGTTGCACGGCTCGA 9140 30 100.0 36 .............................. TCTTTTAGGTTTTTGTGACGAAGTTCGTCCGATTTC 9206 30 100.0 35 .............................. TTGCTACTTGTAATGCTGGTGAAAATTTTAATACT 9271 30 100.0 36 .............................. CTGCCTTTGTTGGCACGTATTTGATGTGTTGGATAA 9337 30 100.0 34 .............................. CCTCTTCTTTAACCTCCGCATCATCAAAATCAAA 9401 30 100.0 35 .............................. CTGCCTTTGTTGGCACGTATTTGATGTGTTGGATA 9466 30 100.0 36 .............................. TCTGCGATCTTTGTTATATTTAGTCTATCATATGGA 9532 30 100.0 38 .............................. ACAGCGAAGAATACGCCATAAGCAACAAGAACAGCACC 9600 30 100.0 34 .............................. CTTTGAAATTTGATAGGCTATAAGGAGTAAAAAA 9664 30 100.0 36 .............................. ACTGCTGGGGCTATTCAGTCTGAAAGCGTGCGTAAA 9730 30 100.0 38 .............................. CCGTCACCCTTTCCGTCTTCTTTGCCGTTGCCACTATT 9798 30 100.0 37 .............................. GGTATATGTCCAACCCTAGTATTGTGGAATATAACAT 9865 30 100.0 37 .............................. TATAAAGAACAGCAGTTGCATAAGAAAGGATTAAACC 9932 30 100.0 36 .............................. CCTTTAAGGAAGTGAATATGCGAGCAAGGAATTTAT 9998 30 100.0 37 .............................. TATAAAGAACAGCAGTTGCATAAGAAAGGATTAAACC 10065 30 100.0 36 .............................. CCTTTAAGGAAGTGAATATGCGAGCAAGGAATTTAT 10131 30 100.0 37 .............................. TATAAAGAACAGCAGTTGCATAAGAAAGGATTAAACC 10198 30 100.0 36 .............................. CCTTTAAGGAAGTGAATATGCGAGCAAGGAATTTAT 10264 30 100.0 37 .............................. ATTGAAACAAACGCAGAAACTGAGAAAATAAGCGAGC 10331 30 100.0 36 .............................. GTTTATAGACTTTTGAAAAGTCAATGTCCCTATTAA 10397 30 100.0 35 .............................. TTGTCATTAAAATGCTAATACCAAGACCGACAGCA 10462 30 100.0 33 .............................. CCCACGACTGGCGGCAACGGAATAGGAGCTGCA 10525 30 100.0 34 .............................. TCGATGAAGCTAAACGAGCCAAGAGGCAAAATAC 10589 30 100.0 36 .............................. ATACTGCTACTTCTTTTTCGGCACTACAAAGCGAGC 10655 30 100.0 35 .............................. TTTCTTGTAATGCAGAATTTGAAAGAGTTTTAAAA 10720 30 100.0 39 .............................. TCACCAACAAATGGCTGAGGATTTTTGTTGTATTTCCAA 10789 30 100.0 34 .............................. CCCGTTGGGTCTGTATAATAGGGGCTATTAAGCC 10853 30 100.0 36 .............................. CAACAAAGCCCTTATACTCGCATACATCATAGCTTT 10919 30 100.0 36 .............................. TATAAGGAAACAAGCTTATATAAATAGTTAAAGGGG 10985 30 100.0 36 .............................. ATTTGACAAGAACGCCCAATTTGCAGGGGCGGACGC 11051 30 100.0 36 .............................. TTATTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTG 11117 30 100.0 34 .............................. AAAAAGATATAAAAATAGAAATGAACTAAATTTT 11181 30 100.0 36 .............................. TTATTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTG 11247 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGTCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : AAAAAGATATAAAAATAGAAATGAACTAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //