Array 1 1974615-1975124 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1974615 28 100.0 32 ............................ TCCGTAGCTGTCATTGCAGGCCCATTATTGGG 1974675 28 100.0 32 ............................ TAGTGTCGGTAGGCCGTTTGTGCGGGCTTCGC 1974735 28 100.0 32 ............................ AGCCTCTTGGTATTTTTCATCAAAATATGTAC 1974795 28 100.0 32 ............................ ACTCTTCGCCGCTTTTAATTACTGAGGCAAAA 1974855 28 96.4 32 ......................G..... TTCTGGGCACTCGTCGTAACCAGCCTCAAAAA 1974915 28 100.0 32 ............................ AATCGAATATATTTGCTGTAATAATTCATTGC 1974975 28 100.0 32 ............................ TCGGATTTAACCAGAGCAGGCGCTCGGTTGTT 1975035 28 100.0 32 ............................ TCGAAGACATGTCTCTGCGCAAACAGCTTTGC 1975095 27 89.3 0 ..................C....-.C.. | GAA [1975111] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACCAAAACCTTGCAGAACGATTTCCAGATCCCGCAGGACAAAGTGAATCCGGTGATTTTTGCCGGTGACAAAGCCGGGCAGAACACCAAAGTTCAGTGGCTGAAAGACAAACAGATTAAAATATTCTACGGAGATTCTGACAACGATATCACTGCCGCCCAGGCCGTGAGCGCGAGGGGCATTCGCGTACTGCGCGCCTCTAACTCAAGCTACAAACCATTGCCGCAGGCCGGTGTGTTTGGCGAAGAAGTGATTGTGAATTCGGAGTATTGAGCAACCCCGTCCTTCGCAGTAAAGAAACAGGGCACCGTTTTGCTCCCACCCCTGCGAAGGGCTGGGGTGGGGTATAAATGGCCTTTCAGAACTGACCCTCTTTTTTGCACCATCTCTAACTCCTTGATTTTACTGAATCACGCGAGCTACACAAAAAAGAGGGTATTTCATCCCATAAAGGGACAATCTTTTGCCGTTCAAAGCGTAAACCTGAAAAACCAACT # Right flank : ACTTACTGCAAACCATAAAAACTCCTTGGAAGCAGTATCTCATCTCGGTGATTTGCCCATTTTGAATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAGCCAGGTTTCTGCCGTAGCACTGCATTGTGTGCTATCGCTTTGTATCACCTTTATAAAACGTTTTTTAACGTATATTGTTCAGGTGACTCAGGCGGGGCAGCCTTCGGGCTGGTCGGAAGGTAGACCGATCTCCTACTCCCGCCTGAGTTACCGCCTGTTGCGTAGGAGCTAGGCGGTAGCAGATATGCAATCTGCCATAGGTCCAGTCAATGAAGACAATAGATACCAACGAAACATCCCCCGATTCATGGACACTCACCGATCGCTGCCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGGCTTTGCATCATGCTGCAAAACGAGCTTGAATACCTTGAAGCKACGTTATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2454520-2454847 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2454520 28 100.0 32 ............................ GGTATTTGGGTCCCGCCCTTCCATGATTGCGA 2454580 28 100.0 32 ............................ ACGAGTCAGCATCAAAAGCTTGTGCAGCTTCG 2454640 28 96.4 32 .C.......................... ATAATGCCCATGACTTCGTTGTAAATCTCATC 2454700 28 100.0 32 ............................ TAATACAGCCGGCAATCGACGCGCTGAAAAAT 2454760 28 96.4 32 .................T.......... TAATACAGCCGGCAATCGACGCGCTGAAAAAT 2454820 28 75.0 0 .................T...CGC.TGC | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACATTCTCAGCGCACGCCTGAAAGCGCTGGTGGCCGAAGGCATTTTGAAAATTGAACCGGCGGCCGATGGCTCGGCGTATCAGGATTACGTGCTGACCGAAAAGGGGCTGGCGCTGCAACCGGTGCTGGTCGCGCTGGGGCAGTGGGGAAGTGAATACCTGTTTGAGGAAGGCGAAGCCTGTACGCAGCTTGTGGACAGTGAAAACCGCCAGCCACTGCGCAAACTGGAAATCCGAGCGCAGGACGGACGGGTGCTGGAGAGCCGGGATATTACGGCGATCATTCCTGAGATTTAAAATTTGAACTCGATCCGCTCCCTCACCTGCGAAGGGGAGGGCTGGAGTGGGGTATTAATGGCATCTCAGTCACAACCCTTTTCTTCGAGCTGTATCTAACTCTTTGATTTTAATGAAACACATGAGCCGCATAAAAAAGAGGGTTTTTTTGGCAAAACAGGGATAATCTCTTGCAGTTCAAAGCATAAACCTTAAAACTCAACT # Right flank : CAACTCACTGCAAACCATAAAAACTCTCTGGAAGCAGTATCTCATCCCAGCATTTTGCCCATTTTCTATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGAACCCTCATGGCGGAAGTTTATATTTCGCCATCGCTTTGTATTACCTGAAAATAACGAATTATTATCGTATATTATTGGTAACTCGGGCGGGGCAGCTTTAGGGCTGGTCGGAGAGGGTAACCGATATTCCTACCCCCGCCTGAGTTACCACCTTAGCGTAGGAACTTAAGTGGTAGCGTGATACGCAATCTAATATTAGGTTCTGTTCAAATGGATATTACTCTTACAAACGAAACATCCCCAGATTCATGGACGCTCACCGATCGCTGTCGTTTGCTGGCAAATGCGCTGGTGAATCCGCAAAATAGAGCCGCGCAGGATCAGCTGTGCATGATGCTGCACAACCAGCTCGAAATTCTTGAAGTGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2505805-2506375 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2505805 28 100.0 32 ............................ CCGTGCCGTGGGTGTGGCTCGCAAGCAACCGG 2505865 28 100.0 32 ............................ TGCTGACCCTCCCAAATGGGCAGTATTCCAGC 2505925 28 100.0 32 ............................ GTGATAATACGGTCATAGAAGGAAAGCTGAGA 2505985 28 100.0 32 ............................ TGGGTGTAACGCCGGTAACTCGATATCGCAAG 2506045 28 100.0 32 ............................ GTGGAGATCCAGAACGTCACGCAGCGCCGCAA 2506105 28 100.0 33 ............................ AATACTTCGACATTAAGCGCCCGCTTTTCTTTA 2506166 28 100.0 32 ............................ TGGCTTCGCGTTCGTGCTCCGGGTAACTGGCT 2506226 28 100.0 32 ............................ ATCAATGCCGGCATCCCACAAATCTGGCTTAA 2506286 28 100.0 32 ............................ AGAGATCAGAGACGACACTCTCACCGAGCGTA 2506346 27 92.9 0 .......................-.C.. | GCC [2506365] ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACTAAGATTTAAGTCTTTAAAGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTATCGCAGGCACGACGGACATGTTCTTTCACCGCAGCGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCTTCGAGCCATAGGTCTCGAAGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCATTCCCGATCGAATAAAACCTTCGTTCTGTTTCTTTCCCAAAATCCAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCTGGGATGGGGTATTAATGGCATCTCCGAGCTGACCCTCTTTTTTGCGCCTCCGCTAACTCATTGATTTCACATACTCAGTAAACCTCTCAGAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAAAGCGTCACCCTTAAAACCCAACG # Right flank : ACTTACTGCAAACCATAAAAACTCCTTGGAAGCAGTATCTCATCTGCGCGATTTGCCCATTTTTAATGTGTGGGTATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGCTTAGGAATCCGGTAAACTGAAACGCAAAAGAAAATGCGTGTCGCTTCGCCATATCGATTGAAAAGTGGATTTTTTATCACTTTTGTAATATCAATTGGTGGCTCAGACGGGGCAGCCTTAGGGCTGGTCGGTTTCCAGTTTTCCGATTCCTAACCTCGTCTGAGTTACCACCCATGAGCTTAGGAACTCCGGTGGTAACGTAACGCCTCAACTGGAGCCAATGACATGACAACTCACACCAACGAAACATCCCCCGATTCCTGGACACTCACCGATCGCTGTCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGACTTTGCATCATGCTGCAAAACGAGCTTGAATACCTTGAAGCTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2510308-2510455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2510308 28 96.4 32 .........................C.. CCGCATCACGCCGGGGCCGTCCTGGAAATGTT 2510368 28 100.0 32 ............................ GCTAAAAACGCCGGACTCAACACAGCTTGCAG 2510428 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : GACTGGAAGCATCGATTTCTTTGCTGAAAAGATAGGGGGCATGTTCACGGGTTGCGGTAGCTTTTCCCGTGGCGTTGTCGGTGGTGATGGAGACGCCGTGATGCAAGCCGTGGATCTCAATGCTACCCTCACGGCCTATTATATCGACAGAGCCATGTATTCTCGTGCCGCTGTCATCCTTTAACCATAAATAAGCGGGGATCGCCATTTCGTTAGTCCTTAATTGTGTGAAATAGCAGATTAGCTTTTTAAAAAGCAAATAATTGTGTTTAAACCTTCAACTCATTGATTTTCGGAAAGTGAGTACATTGAACCGATAACTCATTAATCTTCAAATTACGCCCGCAAGCTCATATGTTTGCAGCTAACCCTCTTTTTTACCCTATCGCTAACTCATTGATTTTAAATGTCCGAATCATCCATCAAAAAAAGAGGGTATTTTTGCCAAAACAGGGATAACCTCTTGCCATTCGAAGCGTAAACCTGAAAATCCAACAGTT # Right flank : ATACAGCGAAAATCTCATTAAACTTTTGAATTTACGGGAGTATGGGCATAGGCAAAGCCACTTGCGTGACCTCAGAGGGATCATTTAACGAAGAGACTGATTTAGCAACAGAATCTGTCGCAAATTATCTATAACCAGACTGATGCATCCGGGCAGTGACCCCGGACTTGTCTAACTGCGCAAACACCAGGAGTAAACGCCTGGCATTCAATAATGGAGATATATGAAAGCAATAATGACAGTAGACAAACTTGAATTACGCAACATTAAGTCAATACGAGATTCAGGAAAAATAGGACACAACTTCGATCTGGTCGCTAAGTTGAAAGTCCAGTCACGCTCTATGGGAGCATTTTCTGGCGAAGGTATTGATTGTCCAGATTTACAATGGATTGAAACAGTAGATTGGTACAAGTTAGATACTAATGCAGACAAATGGATCCACGTAGGAACCAATCCAAATAATAAAGATTTATACAAAGCAAACCCAAAATCGCAAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2520330-2520657 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2520330 28 100.0 32 ............................ CTGAAGGAGCTGCGAAGGATGGGGTGTTCGAC 2520390 28 100.0 32 ............................ GACGACGCCCGACACCTTGCCCCCGTCTGGCT 2520450 28 100.0 32 ............................ GATGATATCGACGTTGGACAGTTCCGCTTCCT 2520510 28 96.4 32 ..........................G. ACTCGGCAAAGTCACATCAAGGCTGAGTTCGC 2520570 28 100.0 32 ............................ AGCAGAGGCACGGGTAAAAGAGCTTGAACAGC 2520630 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAAGCTCTGGTTCAGGTTTAAGGTCAAGGTCGTGGGCTCACCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGTCGCAGGCACGACGGACATGTTTCTCGGCTCCTGTGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCCTGAAGCCTCCGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCAGTCCAGGACGAATAAAACCTTCGTTCTGATTATCTTGCAAAATCAGATGCTAAACGGAGATCTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGTCGGGATGGGGTATTAATGGCATCTCAGAAATAACCCTCTTTTTGGGGCTGTTTCTAACTCATTGATTTTAATAGTGCGTAAAAGCTTGAGGAAAAAGAGGGTATTTCTGCCTAAACAGAGATAATCTTTTACAGTTCAATGCGTAAACCTGAAAACCTAACA # Right flank : ACATGGCACTGGCAACCATTGCCCCCTGACGGAGTTCACTGCCTAAAAATAACCGTACGTTTAAAACCGTCCGAAGACGGCTTTAAAGATTTGAGTCAGTCAAAAAGCCATTTACCCGCTCGTGCGGAATCAGCAAGCATTTGAAGAGTTAAAGGGATAGGTTCTTCGTAATCACCGCCACATGAACAAAATGCAAAGATTGAAAATCCTGATGCTTCTGCTGGCCAGTATTTCTCGAAATCAAACTTAGCGGGATCTACTTTGAATTTATCAAAATACTCTTTCATGATGTCGTCACCTGTTTCACACGCCCACACATAATCGCCGGTAGAAAGACTTGTATTAATAGTGACAGGCCAGCGTTTTTTAGAAAAGAAACCGGGCTGATTAAAGCGTTCATTGTACCAGTCAATAATGTCCTCATTGCTTACCATAGGCGGTCTTTCTCATTGGCAATCGTGTTGTAGCGGTTCGTCGCTTTATAGGCGATGGTAGCTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2521300-2521568 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVV01000001.1 Rahnella variigena strain VCR3 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2521300 28 100.0 32 ............................ TGCTGATAAAACACGGTCTGATACTTGTTAAT 2521360 28 100.0 32 ............................ AGTAACGATAGCGCCAGATTTTTGAGCCGGTC 2521420 28 100.0 32 ............................ TGCGTCTTCAGCATTGACGAAGGCATACGAAA 2521480 28 96.4 32 .............T.............. TTCGCTTTATGCCGCTGAAGCGGCTTTTAGTA 2521540 28 78.6 0 ...........T.A..C.....CT...C | C [2521560] ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGAGTTAAAGGGATAGGTTCTTCGTAATCACCGCCACATGAACAAAATGCAAAGATTGAAAATCCTGATGCTTCTGCTGGCCAGTATTTCTCGAAATCAAACTTAGCGGGATCTACTTTGAATTTATCAAAATACTCTTTCATGATGTCGTCACCTGTTTCACACGCCCACACATAATCGCCGGTAGAAAGACTTGTATTAATAGTGACAGGCCAGCGTTTTTTAGAAAAGAAACCGGGCTGATTAAAGCGTTCATTGTACCAGTCAATAATGTCCTCATTGCTTACCATAGGCGGTCTTTCTCATTGGCAATCGTGTTGTAGCGGTTCGTCGCTTTATAGGCGATGGTAGCTTAACTATCCTCAGCTAACCCTCTTTTTTACGCTATCTCTAACTCATTGATTTTAAATCTCCGAATCACCAATAAAAAAAAGAGGGTATTTCTGCCTAAACAGAGATAATCTTTTACAGTTCAATGCGTAAACCTGAAAACCAAACT # Right flank : CGCAAAACTCACCCCACCAAATCCCGCTCAACAAACCCCTTCCGCCATTGTGTTGGTGTCGTCCCCAGCCGCTGGCGGAAATGATGCCGCAACGTTTCCGGCGATCCAAAACCGGCTTGTTCGGCGACACGGTCAATACTCAGCGTGCCGTTTTCCAACAGGGCGCAGGCTTTTTCCAGCCGCACGCTCAGCATCCATTCGCCGGGCGTGGTGCCGGTTGCATCATGGAAACGACGCAGGAAGGTGCGGCGGCTCATTCCGGCTTGTGCAGCAAGCTGATCAATCACCATGGGCGTATTGAGATGGCTGCGTAAATCATCAAGCAACGGGGCGAGCGTTTTTGCCGGATACCGCGGAACCGGCTGCTGGATCAGCTGTGCCTGATTTCCTTCACGCAGCGGCGGTGTCACCATCCGTCGTGCCGTGCGATTCGCCACTTCAATGCCGTAATCGCGGCGGATCAGATGCAGACACAAATCGACGCCCGCCGCACCCCCGGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //