Array 1 10498-12113 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABS01000060.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2926_R1 NODE_14_length_120025_cov_0.808632_ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10498 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 10559 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 10620 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 10681 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 10742 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 10803 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 10864 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 10925 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 10986 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 11047 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 11108 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 11169 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 11230 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 11291 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 11352 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 11413 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 11474 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 11535 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 11596 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 11657 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 11718 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 11779 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 11840 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 11901 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11962 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 12023 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 12084 29 100.0 0 ............................. | A [12111] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 231828-233013 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABS01000034.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2926_R1 NODE_6_length_239252_cov_0.82101_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231828 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231889 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 231950 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232011 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232072 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232133 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232194 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232255 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232316 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232377 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232438 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232499 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232560 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232621 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232682 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232743 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232804 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232865 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232926 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 232986 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //