Array 1 43-310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQXR01000103.1 Snodgrassella sp. CFCC 13594 contig00103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 100.0 32 ............................ AGACTTTGGGGGTGAAAAGAACCCCCAAAGAC 103 28 100.0 32 ............................ ATTCAGTTTCACCCTGCCAAGTCCAAGGCAGT 163 28 100.0 32 ............................ ATAAGCCTCTGCCTTTCCGTTCAGTAGATTGG 223 28 100.0 32 ............................ ATCAAGCTCTTTTCGTATCTGTTCTGCTAGTG 283 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTTCAGGCAGCTTAGAAA # Left flank : AGCTTAGAAATTTTTTGAAAGACCTGTAAAAACACGAATACGG # Right flank : GACTTAATGGTCATGGAGAACAAGCATGAATAGTTCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQXR01000104.1 Snodgrassella sp. CFCC 13594 contig00104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 100.0 32 ............................ ACCAAAATAACCATCATTATCGAAATCTTGTT 103 28 100.0 32 ............................ AATCATTCTTGTGAGCACATCTACATCATGCT 163 28 100.0 32 ............................ AATCCAATTTCAATTTCTTGGTGCAAATCTGG 223 28 100.0 32 ............................ ATGCAGACAAGCAATTTCGCCATTTTTTTGAG 283 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTTCAGGCAGCTTAGAAA # Left flank : AGCTTAGAAATTGAAGTGTTCAACCAAGTTTTTGAAAACACCG # Right flank : TTCCGTGTGAAGATGTACCCACAATCATTACAGTTCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37-1144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQXR01000005.1 Snodgrassella sp. CFCC 13594 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 32 ............................ TGAAAGGTTAGCGATGAAATGGATTTTACGAA 97 28 100.0 32 ............................ CGAATATCAAGAATATGATTATGTAACCCGCC 157 28 100.0 32 ............................ AGATACTTCTGCTCAAACAGTCCCGTATAAGG 217 28 100.0 32 ............................ TTTAACGTATTTATATTTGAGTAAATCAGCAC 277 28 100.0 32 ............................ CAAAGTGGGCGTTTTTAAACAAGGAGCACATT 337 28 100.0 32 ............................ GCTCAGATTCTTGAGATACAAGAACACGAGGT 397 28 100.0 33 ............................ ACTCGCCGTCAGCTTGCCAAATATCTGGGGTAT 458 27 96.4 32 .................-.......... GCTGGGGTCTCTCCAAAATGGGCGTTTTTAAA 517 28 100.0 32 ............................ AGCAGGCAACCAAAGATAATAACCTGGTATCC 577 28 100.0 32 ............................ TTCAACCCCGGCTGCTCGGCGGCGGGCAAATA 637 28 100.0 32 ............................ ATGATTACGCTTTTAGTTATGACAACGCATGT 697 28 100.0 32 ............................ GAGCAAAGCTGCTGCAGTGTGTTATAACGCGC 757 28 96.4 32 .......................G.... TATCCAGTTCAGCAAAAAATGAGTCAGGAAAA 817 28 100.0 32 ............................ TGATACGCCGGACATGTGCGCAGTTAACCCGA 877 28 100.0 32 ............................ ATGATTTCTCACTTAATTGAATATGTAACGAA 937 28 100.0 32 ............................ TATGGGCGGCTTTTTCATGAGGTGACGATATG 997 28 100.0 32 ............................ ATTCATCATGCGCGTAAACACTTTACGCAACG 1057 28 100.0 32 ............................ TCAAATTCGCGGCCCAACACCGCTTTCACCGC 1117 28 89.3 0 .....................C..AT.. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.1 32 GTTCACTGCCGTTCAGGCAGCTTAGAAA # Left flank : GAAAAGCTGCTCATCGTCATATCATTGTCTTTGAGCG # Right flank : ATTTTATTTATTATTCAATAAATTCATGAATAAACTCGGTTATCTGTCATACATCAACAGCACCAAACAACAACCCTTCTTTAATCGCGCGAATTTTGTCGCGAATCACGGCGGCCTCCTCAAACTGCAAATCGCGTGCCGCCGTTTGCATGGCTTTTTCCAGCTTAGCGATTTCTTTTAAGGCGTCTTCTTCGCTGCGGATTTCCTTTATTTTGATTTTATGTTTGCCGCGGCCTTTGCCATTATCATCGTGGTAAACGCCATCAATGATGTCTTTCACTTGTTTGTGAATTGGCGTGGGGACAATACCATTTGCTTCATTAAAGGCAATTTGCTTCTCGCGCCGCCGATCGGTTTCATCAATGGCCGATTTCATCGAGTCAGTGATTTTATCGGCGTATAAAATGGCCTCACCATTGATGTTGCGGGCTGCTCTACCAATGGTTTGAATCAAGCTGCGATGACTGCGCAAAAAGCCTTCTTTGTCGGCATCCAAAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQXR01000125.1 Snodgrassella sp. CFCC 13594 contig00125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 100.0 32 ............................ TCGGTAAACGGCTTGGCGGTGTGCCGTTAGCC 103 28 100.0 32 ............................ TGAAACGGAGCGCAAAGCGGTCGTTCAGGCAG 163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTTCAGGCAGCTTAGAAA # Left flank : AGCTTAGAAAAACAAGCTGGCGAACATAAGAATCAACCATATG # Right flank : GGTTACAGTAAAAGAAGAATCTTGCTCTAAATGTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-1332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQXR01000054.1 Snodgrassella sp. CFCC 13594 contig00054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 ............................ TGCTGAAAAATTTGATCAATATTTGCTTGAAA 103 28 100.0 32 ............................ AATATCTGGGGTATCTGGCGATTGGTACCATT 163 28 100.0 32 ............................ TAAAACACCGCCCCAATTTCCTGCTTTGTGGC 223 28 100.0 32 ............................ AGCCGATTAGGACAATGGGAACCAACCACCAT 283 28 100.0 32 ............................ TTGCGTCGTCTTCGGGCGATGTGAAGCCTTTG 343 28 100.0 32 ............................ TAGAGTTGCACCATCGCGGAATACTGGCTCCA 403 28 100.0 33 ............................ TCTCCATTTTGCAAGTTGTGCACACTTTTGTCT 464 28 100.0 32 ............................ AAGCCAGATTGTGGGCATTGTTCAAAAGACAC 524 28 100.0 32 ............................ ATAGGACCCACGGCTTGTCTGTTTCTTGTGCG 584 28 100.0 32 ............................ ATGCGGCATAATAGTAATCCTGGTTTATGTCT 644 28 100.0 32 ............................ TGTCCATAAGATTAGAAAGCCAAAAGGCGCAC 704 28 100.0 33 ............................ CAGGAGAAGCAACTACCCTGATTCCCTTTAATA 765 28 100.0 32 ............................ TCAACACCGAAAAAAAAGGCGGTGAAGAATGA 825 28 100.0 32 ............................ AACCGCATGAGCCGCAAAAACTCCACCATTCC 885 28 100.0 32 ............................ ATACGGCCAGATCGTGAAAATCTAAATCATCC 945 28 100.0 32 ............................ ACTCGTGGCCCGTCCCGTCCCGTTCCTGAATA 1005 28 100.0 32 ............................ ATATCAACACAGCCATCGAATCCCAGCCACCA 1065 28 100.0 32 ............................ AATCGTCGCTACCTTTCCCGCGTCGTGGTACG 1125 28 100.0 32 ............................ GTCATACGCACCAAAAATAGGCCGCACAAAAT 1185 28 100.0 32 ............................ GAACCACTGGATTTGTCAGCCTATACATTACC 1245 28 100.0 32 ............................ GATGACCTTGTTGAGGTTTCAATACCTGAACA 1305 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTTCAGGCAGCTTAGAAA # Left flank : AGCTTAGAAATGGTATCCAAGTAGCACCTTGATCAACTGAAAG # Right flank : ATCATTTGAGCTTGGTACAAACCACCATCAAAGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //